2025/04/30 更新

写真a

オカムラ ヒロシ
岡村 寛
Hiroshi Okamura
所属
データサイエンス研究科 データサイエンス専攻 教授
データサイエンス学部 データサイエンス学科
職名
教授
外部リンク

研究キーワード

  • 海洋生態

  • 海洋資源

  • データサイエンス

  • 目視

  • 数理モデル

  • 水産資源学

  • 生物統計学

  • 海洋保全

研究分野

  • ライフサイエンス / 水圏生産科学

経歴

  • 横浜市立大学   データサイエンス学部   教授   農学博士

    2024年4月 - 現在

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    国名:日本国

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  • 日本大学生物資源科学部   非常勤講師

    2021年4月 - 2021年9月

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  • 国立研究開発法人 水産研究・教育機構 水産資源研究所   漁業情報解析部   主幹研究員

    2020年7月 - 2024年3月

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  • 国立研究開発法人水産研究・教育機構   中央水産研究所   グループ長

    2012年4月 - 2020年7月

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  • 独立行政法人 水産総合研究センター 国際水産資源研究所   外洋資源部   主任研究員

    2006年4月 - 2012年3月

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  • 独立行政法人 水産総合研究センター 遠洋水産研究所   外洋資源部   研究員

    2001年4月 - 2006年3月

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  • 水産庁 遠洋水産研究所   外洋資源部   研究員

    1995年4月 - 2001年3月

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▼全件表示

論文

  • Forecasting fish recruitment using machine learning methods: A case study of arabesque greenling 査読

    Hiroshi Okamura, Shoko Morita, Hiroshi Kuroda

    Fisheries Research   278   107096 - 107096   2024年7月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Elsevier BV  

    DOI: 10.1016/j.fishres.2024.107096

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  • Hierarchical modelling approach to estimate the abundance of data-limited cetacean species and its application to fishery-targeted and rarely seen delphinid species off Japan

    Y Kanaji, H Sasaki, T Hakamada, H Okamura

    ICES Journal of Marine Science   80 ( 6 )   1643 - 1657   2023年6月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Oxford University Press (OUP)  

    Abstract

    An assessment of the abundances and their trends is urgently needed for the conservation and management of fishery-targeted and rarely seen cetacean species (FTCS and RSCS, respectively); however, such assessment is often challenging because of the paucity of available data. In particular, the number of sightings is smaller than the general requirement for the reliable estimation of a detection function, and the spatial coverage of many cetacean surveys is insufficient. To address these issues, we propose a Bayesian approach that uses the previous abundance estimation of the same species or a species with similar biological traits as prior information. Therefore, we obtained the latest abundance estimates for six FTCS and two RSCS. For FTCS, we also estimated abundance trends by fitting an exponential population dynamics model with random effects accounting for interannual changes in animal distributions to the posterior samples of the Bayesian abundance estimates. Our approach enables us to (1) facilitate stakeholders’ consensus by maintaining previously agreed abundances while updating the conservation information; (2) identify the species of greater concern and prioritize conservation efforts towards those species; and (3) monitor the abundance and trends of data-limited cetacean species.

    DOI: 10.1093/icesjms/fsad091

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  • Which fisheries and biological factors affect the misclassification of stock status determined by data-limited methods? 査読

    Mitsuyo Miyagawa, Hiroshi Okamura, Momoko Ichinokawa

    Fisheries Research   257   106491 - 106491   2023年1月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Elsevier BV  

    DOI: 10.1016/j.fishres.2022.106491

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  • 水産資源の持続的利用をめざして:最大持続生産量と計量生物学 招待 査読

    岡村 寛

    計量生物学   43 ( 2 )   189 - 230   2023年

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    担当区分:筆頭著者, 最終著者, 責任著者   記述言語:日本語   出版者・発行元:日本計量生物学会  

    DOI: 10.5691/jjb.43.189

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  • Fish environmental DNA in Tokyo Bay: A feasibility study on the availability of environmental DNA for fisheries 査読

    Yuki Hongo, Shota Nishijima, Yuki Kanamori, Shuhei Sawayama, Kazuki Yokouchi, Natsuki Kanda, Shiori Oori, Yasuyuki Uto, Mitsuhiro Ishii, Hisanori Mita, Seiji Akimoto, Akane Kusano, Kyu Okabe, Tetsuya Yamazaki, Nobuto Fukuda, Toshihiro Onitsuka, Masayuki Minagawa, Hiroshi Okamura, Kentaro Niwa, Satoshi Nagai, Shigenori Suzuki, Michio Yoneda, Toshihiro Yamamoto, Hiroaki Kurogi

    Regional Studies in Marine Science   47   2021年9月

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    掲載種別:研究論文(学術雑誌)  

    Environment DNA (eDNA) is a nonlethal sampling method that has potential for evaluating fisheries resources. To evaluate whether eDNA information is useful for fisheries, we collected and analysed eDNA samples from 14 sites in Tokyo Bay from April 2018 to March 2020. Using MiFish universal primers, fish mitochondrial 12S rRNAs were amplified from the eDNA by polymerase chain reaction (PCR) and then sequencing. A total of 535 eDNA samples yielded 44.5 million reads, with 197 of teleosts and 16 of elasmobranchs identified. Of those, 42 identified species were commercially important, with the most abundant being Engraulis japonicus (Japanese anchovy), followed by Konosirus punctatus (dotted gizzard shad) and Lateolabrax japonicusi (Japanese seabass). Mitochondrial cytochrome b copy numbers of K. punctatus and L. japonicus showed a seasonal trend, although catch per unit effort for L. japonicus was not correlated with copy number. Although eDNA is a powerful tool that can detect the presence of fish species from a water sample, caution should be used when interpreting fish biomass based on eDNA dynamics until the method has been better studied.

    DOI: 10.1016/j.rsma.2021.101950

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  • Novel robust time series analysis for long-term and short-term prediction 査読 国際誌

    Hiroshi Okamura, Yutaka Osada, Shota Nishijima, Shinto Eguchi

    Scientific Reports   11 ( 1 )   11938 - 11938   2021年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Nonlinear phenomena are universal in ecology. However, their inference and prediction are generally difficult because of autocorrelation and outliers. A traditional least squares method for parameter estimation is capable of improving short-term prediction by estimating autocorrelation, whereas it has weakness to outliers and consequently worse long-term prediction. In contrast, a traditional robust regression approach, such as the least absolute deviations method, alleviates the influence of outliers and has potentially better long-term prediction, whereas it makes accurately estimating autocorrelation difficult and possibly leads to worse short-term prediction. We propose a new robust regression approach that estimates autocorrelation accurately and reduces the influence of outliers. We then compare the new method with the conventional least squares and least absolute deviations methods by using simulated data and real ecological data. Simulations and analysis of real data demonstrate that the new method generally has better long-term and short-term prediction ability for nonlinear estimation problems using spawner–recruitment data. The new method provides nearly unbiased autocorrelation even for highly contaminated simulated data with extreme outliers, whereas other methods fail to estimate autocorrelation accurately.

    DOI: 10.1038/s41598-021-91327-8

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  • Spatio-temporal model reduces species misidentification bias of spawning eggs in stock assessment of spotted mackerel in the western North Pacific 査読

    Yuki Kanamori, Shota Nishijima, Hiroshi Okamura, Ryuji Yukami, Mikio Watai, Akinori Takasuka

    Fisheries Research   236   2021年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER  

    Species identification based on morphological characteristics includes species misidentification, leading to estimation bias in stock assessment and posing challenges difficult to be resolved. The spawning eggs of spotted mackerel Scomber australicus and chub mackerel S. japonicus in the western North Pacific are used for stock assessment as an index of spawning biomass and are classified based on egg diameter by past evidence. However, the difference in the distribution of egg diameters between the two species has become so ambiguous that the spawning eggs of chub mackerel may be classified as spotted mackerel. This can be explained by the larger distribution of egg diameters in chub mackerel with increasing stock abundance, resulting in overlap with the distribution of egg diameters in spotted mackerel. This leads to species misidentification and biased estimates of spotted mackerel abundance. To overcome this bias, it is necessary to develop a standardization method to remove the effect of species misidentification. Here, we demonstrate that a recently-developed spatio-temporal model can easily and efficiently reduce estimation bias for egg density and stock abundance in the spotted mackerel, using 15 years data for spawning eggs. We incorporated species identification error as the effect of the egg density of chub mackerel on the catchability of spotted mackerel in the spatio-temporal model. The index estimated from the model decreased temporal fluctuation substantially. When using the index accounting for species misidentification, the retrospective bias of abundance estimates for spotted mackerel decreased by about half compared with using the indices that ignored species misidentification. These results suggest that incorporating species misidentification bias is an essential process for improving stock assessment.

    DOI: 10.1016/j.fishres.2020.105825

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  • Clarifying the effects of environmental factors and fishing on abundance variability of Pacific saury (Cololabis saira) in the western North Pacific Ocean during 1982–2018 査読

    Akihiko Yatsu, Hiroshi Okamura, Taro Ichii, Kazuyoshi Watanabe

    Fisheries Oceanography   30 ( 2 )   194 - 204   2021年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Pacific saury (Cololabis saira) has a 2-year life span and age-1 fish migrates from the central and western North Pacific to Japanese waters from summer to winter. To understand interannual abundance variability of Pacific saury in the North Pacific, we examined the extended Japanese standardized catch per unit effort (esCPUE) with generalized linear models (GLMs) during 1982–2018. Explanatory variables included proxies of total and non-traditional fishing effort (Ettl and Ent) and environmental factors. Each environmental variable was averaged for years t -1 and t, corresponding to esCPUE in year t, as esCPUE represented two-year classes. Ettl and Ent were averaged for years t - 2 and t-1, assuming fishing of year t affects biomass in year t + 1. We compared four GLMs with different explanatory variables: (a) environmental factors only, (b) fishing effort (without interactions) only, (c) environmental factors and fishing effort (without interactions) and (d) environmental factors and fishing effort (with interactions, i.e., time-varying effects). Explanatory variables of the best GLM in terms of AICc included the following: Ent with different effects between 1982–2015 and 2016–2018, sea surface water temperature (SST) of the Kuroshio Recirculation Area (KRA) in winter, North Pacific Gyre Oscillation (NPGO) in winter, Southern Oscillation Index in winter, and the biomass of Japanese sardine. The NPGO, a proxy of zooplankton abundance, and KRA-SST may affect the early growth and survival rates of Pacific saury. We hypothesized the abundance variability of Pacific saury was driven by environmental factors and fishing, the latter of which more adversely affected since 2016.

    DOI: 10.1111/fog.12513

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  • State-space modeling clarifies productivity regime shifts of Japanese flying squid 査読

    Shota Nishijima, Hiroshi Kubota, Toshiki Kaga, Suguru Okamoto, Hisae Miyahara, Hiroshi Okamura

    Population Ecology   63 ( 1 )   27 - 40   2021年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Regime shifts of climatic and environmental conditions potentially affect the productivity of fishery resources, posing challenges in stock management. The stocks of the Japanese flying squid (Todarodes pacificus) are suspected to suffer from regime shifts, but detecting the occurrence of regime shifts in this species is generally difficult and unreliable because the short-lived nature of this species inherently confounds the effect of regime shifts with observation and process errors. Here we developed a new state-space assessment model to evaluate the influence of regime shifts on the spawner-recruit relationship of the Japanese flying squid. The model simultaneously estimates the population dynamics of multiple stocks that could share some life history parameters, thereby stabilizing parameter inference. We demonstrate that two regime shifts in productivity around 1991 and 2015 caused two- to threefold changes of maximum sustainable yields. The model with regime shifts clarifies the relationship between fishing pressure and spawner abundance that is difficult to detect in a model with no regime shift. The state-space approach is a promising tool for accurately assessing stock status by separating the recruitment process from observation errors and is expected to contribute to the effective management of marine biological resources sensitive to regime shifts.

    DOI: 10.1002/1438-390X.12062

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  • Estimating the maximum sustainable yield of snow crab (Chionoecetes opilio) off Tohoku, Japan via a state-space stock assessment model with time-varying natural mortality 査読

    Yasutoki Shibata, Jiro Nagao, Yoji Narimatsu, Eisuke Morikawa, Yuto Suzuki, Shun Tokioka, Manabu Yamada, Shigeho Kakehi, Hiroshi Okamura

    Population Ecology   63 ( 1 )   41 - 60   2021年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    A maximum sustainable yield (MSY) obtained by maintaining or restoring fish stock levels is a tangible benefit of ecosystem services. Snow crab (Chionoecetes opilio) off Tohoku, Japan has been managed by a total allowable catch since 1996, although the abundance has not increased. Surprisingly, there was no increase after 2011, when fishing pressure was greatly reduced because of the Great East Japan earthquake. This implies that some of the crab's biological characteristics, such as recruits, natural mortality coefficient (M) and terminal molting probabilities (p), might have changed. We developed “just another state-space stock assessment model” to estimate the MSY of the snow crab off Tohoku considering interannual variations in M and p. The multimodel inference revealed that M increased from 0.2 in 1997 to 0.59 in 2018, although it did not vary according to instars, sex or terminal molt. The parameter p also increased by 1.34–2.46 times depending on the instar growth stages from 1997 to 2018. We estimated the MSYs in three scenarios, which changed drastically if M and p were set as they were in the past or at the current values estimated from this study. This result indicated that the MSY of snow crab would also vary with time based on their time-varying biological characteristics.

    DOI: 10.1002/1438-390X.12068

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  • Multiple-model stock assessment frameworks for precautionary management and conservation on fishery-targeted coastal dolphin populations off Japan 査読

    Yu Kanaji, Hikari Maeda, Hiroshi Okamura, André E. Punt, Trevor Branch

    Journal of Applied Ecology   58 ( 11 )   2479 - 2492   2021年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Stock assessment approaches are often oversimplified due to lack of biological knowledge and insufficient data. In spite of world-wide attention, fishery-targeted coastal dolphin species in Japan have lacked in-depth quantitative stock assessments because of limited time series of population size and an absence of associated biological information. We consequently developed integrated population models that analysed multiple sources of data simultaneously with published biological information within a Bayesian framework. We estimate population status and trends for three main species targeted by fisheries, bottlenose dolphins Tursiops truncatus, Risso's dolphins Grampus griseu, and short-finned pilot whales Globicephala macrorhynchus, using single-species age-aggregated and age-structured population dynamics models. Models were fit to absolute abundance estimates from systematic line-transect surveys, four series of abundance indices calculated from fisher's logbooks, and historical catch records. Published biological information was used to develop prior distributions for the biological parameters. We assessed the possible effects of ecological disturbance and competition using state-space and multispecies models. The multispecies model was selected by the model selection both for the age-aggregated and the age-structured approaches. Single-species assessments found that population size declined 4.2% (Risso's dolphin) to 8.0% (bottlenose dolphin) for three species since the late 1800s based on median posterior values, while the state-space and multispecies models found that environmental disturbance and an interaction among species could have reduced population size more substantially. Policy implications. Simple single-species models are often used to provide conservation and management advice for wild animals but, in this case, results from such models are overly optimistic because they overlook important ecological process. In contrast, current population status could be less favorable if environmental disturbance and interspecific competition actually control population dynamics. Even if that is not the case, considering ecological process in the model will provide more precautionary ways. Our approach of combining multiple modelling frameworks is applicable to many other management systems, and offers increased confidence in estimated status and trends over assessments that consider only a single model.

    DOI: 10.1111/1365-2664.13982

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  • Review of the assessment of two stocks of Antarctic minke whales (eastern Indian Ocean and western South Pacific) conducted by the Scientific Committee of the International Whaling Commission. 査読

    Murase, H, Palka, D, Punt, A.E, Pastene, L.A, Kitakado, T, Matsuoka, K, Hakamada, T, Okamura, H, Bando, T, Tamura, T, Konishi, K, Yasunaga, G, Isoda, T, Kato, H

    Journal of Cetacean Research and Management   21   95 - 122   2020年

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  • Spatiotemporal dynamics of the Pacific chub mackerel revealed by standardized abundance indices 査読

    Midori Hashimoto, Shota Nishijima, Ryuji Yukami, Chikako Watanabe, Yasuhiro Kamimura, Sho Furuichi, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Research   219   2019年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER  

    Standardization of catch per unit effort is an effective way to not only extract temporal abundance trends but also understand distribution shifts of fish resources. Chub mackerel in the Northwest Pacific has recently been of great concern to fishermen and fisheries managers because the total catch has been increasing, and fishing grounds have expanded from the Japanese exclusive economic zone eastward to high-sea areas. Understanding the spatiotemporal dynamics of chub mackerel is urgently needed for evaluating the current status (i.e., abundance and distribution) and considering future exploitation. Here we constructed two recruitment indices from pelagic trawl survey data of the Pacific chub mackerel. For recruitment indices of age-0 fish, we integrated an algorithm for automatic area stratification into the delta-GLM that combines two separate generalized linear models (for encounter probability and positive catch rates) to simultaneously investigate changes in relative abundance and distribution. Recruitment indices were high in the recent years of 2013, 2016, and 2017, especially at around 160 °E longitude within the high-sea areas, suggesting simultaneous changes in abundance and distribution. Furthermore, we found that our approach had better predictive ability, especially for positive catch rates, than that of a generalized additive model by cross validation, and the obtained standardized indices mitigated potential bias in stock assessment estimates. Our integrated approach will be useful for understanding the spatiotemporal dynamics of fishes and standardizing abundance indices for stock assessment and management.

    DOI: 10.1016/j.fishres.2019.105315

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  • Climate change shifts the spawning ground northward and extends the spawning period of chub mackerel in the western North Pacific 査読

    Yuki Kanamori, Akinori Takasuka, Shota Nishijima, Hiroshi Okamura

    Marine Ecology Progress Series   624   155 - 166   2019年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:INTER-RESEARCH  

    Despite extensive studies of phenological shifts associated with climate change, a few unresolved issues remain. In particular, little is known about the phenological shifts of marine organisms, and simultaneous evaluations of phenological and distributional shifts in reproduction are needed. Chub mackerel Scomber japonicus in the western North Pacific is a small pelagic fish species with its main spawning ground around the Izu Islands. Since its spawning patterns are af - fected by the sea surface temperature (SST), changes in the spawning time and spawning ground are expected if the SST has increased around the Izu Islands. Here, to elucidate phenological and distributional shifts in reproduction associated with climate change and the underlying causes, we first examined the long-term changes in spawning patterns and spawning ground using a geostatistical model with 40 yr time series data for spawning eggs of chub mackerel in the western North Pacific. We then tested the prediction that increasing SST impacts the timing and distribution of chub mackerel reproduction. We found that the spawning period was extended owing to a delay in the end of spawning. The geographic location of the spawning ground moved northward after the 2000s, and this was probably related to the change in SST. In addition, SST in the spawning ground after the 2000s was not significantly different from the SST in the previous spawning ground. Therefore, the environmental change associated with climate change likely influences phenological and distributional shifts in reproduction simultaneously and underlines the importance of focusing on spatio-temporal changes in reproduction.

    DOI: 10.3354/meps13037

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  • Synchronous multi-species alternations between the northern Humboldt and Kuroshio Current systems 査読

    Yoshioki Oozeki, Miguel Ñiquen Carranza, Akinori Takasuka, Patricia Ayón Dejo, Hiroshi Kuroda, Jorge Tam Malagas, Takeshi Okunishi, Luis Vásquez Espinoza, Dimitri Gutiérrez Aguilar, Hiroshi Okamura, Renato Guevara Carrasco

    Deep-Sea Research Part II: Topical Studies in Oceanography   159   11 - 21   2019年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PERGAMON-ELSEVIER SCIENCE LTD  

    Synchrony of species alternations in the northern Humboldt (NHCS) and Kuroshio (KCS) Current systems was examined by comparing time series data of landings and population statistics of major small pelagic fish species along with climate indices from 1960 to 2015. Target species were anchovy Engraulis ringens, sardine Sardinops sagax, jack mackerel Trachurus murphyi and chub mackerel Scomber japonicus in the NHCS, and anchovy E. japonicus, sardine S. melanostictus, jack mackerel T. japonicus and chub mackerel in the KCS. The time series of total biomass and spawning stock biomass (SSB) of anchovy and sardine for the NHCS and the KCS were well correlated, as were the landings data. Landings of small pelagic fish including jack mackerel and chub mackerel indicated that multi-species alternations may also be synchronous at a community level between the two current systems. Peak landings of jack mackerel and chub mackerel were observed between peaks of anchovy and sardine in both current systems, although the relationships between jack mackerel and chub mackerel differed between the current systems. The species alternations between anchovy and sardine are most reasonably attributable to environmentally-induced changes in the biomass as a major mechanism, although the effect of fishing activity cannot be excluded. Future studies will be required to compare biological characteristics of multiple small pelagic fish species in the pelagic food chain in each current system.

    DOI: 10.1016/j.dsr2.2018.11.018

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  • Integrated multi-timescale modeling untangles anthropogenic, environmental, and biological effects on catchability 査読

    Shota Nishijima, Shigenori Suzuki, Momoko Ichinokawa, Hiroshi Okamura

    Canadian Journal of Fisheries and Aquatic Sciences   76 ( 11 )   2045 - 2056   2019年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:CANADIAN SCIENCE PUBLISHING  

    Catchability plays a central role in fisheries stock assessment. Since catchability often varies with time depending on population density, environmental factors, and anthropogenic effects, assuming constant catchability in population models can lead to biased abundance estimates. Here we present a novel way to simultaneously estimate time-varying catchability and abundance by integrating a short-term (month-based) removal method and a long-term (year-based) age-structured population dynamics model. We applied this approach to commercial fishery data for a Japanese pufferfish (Takifugu rubripes) population and found that the models with time-varying catchability greatly outperformed the models with constant catchability in terms of predictive ability and model consistency. The temporal variation in catchability was parsimoniously predicted by fishing effort and population size, indicating the existence of effort-and density-dependent catchability. Our approach, integrating population dynamics at different timescales, will help avoid inadvertent overexploitation and contribute to sustainable harvesting by enhancing the estimation accuracy of time-varying catchability and abundance.

    DOI: 10.1139/cjfas-2018-0114

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  • Comparison of the performance of age-structured models with few survey indices 査読

    Hiroshi Okamura, Yuuho Yamashita, Momoko Ichinokawa, Shota Nishijima

    ICES Journal of Marine Science   75 ( 6 )   2016 - 2024   2018年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Age-structured models have played an important role in fisheries stock assessment. Although virtual population analysis (VPA) was once the most widely used stock assessment model for when catch-at-age information is available, (hierarchical) statistical catch-at-age analysis (SCAA) is about to take that position. However, the estimation performance of different age-structured models has not been evaluated sufficiently, especially in cases where there are few available abundance indices. We examined the performance of VPA and SCAA using simulation data in which only the abundance indices of spawning stock biomass and recruitment were available. The simulation demonstrated that VPA with the ridge penalty selected by minimizing retrospective bias provided near-unbiased abundance estimates without catch-at-age error and moderately biased estimates with catch-at-age error, whereas SCAA with random-walk selectivity suffered from problems in estimating parameters and population states. Without sufficient information on abundance trends, naïvely using SCAA with many random effects should be done cautiously, and comparing results from various age-structured models via simulation tests will be informative in selecting an appropriate stock assessment model.

    DOI: 10.1093/icesjms/fsy126

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  • Oceanographic factors affecting interannual recruitment variability of Pacific saury (Cololabis saira) in the central and western North Pacific 査読

    Taro Ichii, Haruka Nishikawa, Kedarnath Mahapatra, Hiroshi Okamura, Hiromichi Igarashi, Mitsuo Sakai, Satoshi Suyama, Masayasu Nakagami, Miyako Naya, Norihisa Usui, Yoshihiro Okada

    Fisheries Oceanography   27 ( 5 )   445 - 457   2018年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Pacific saury (Cololabis saira) has a short life span of 2 years and tends to exhibit marked population fluctuations. To examine the importance of sea surface temperature (SST) and mixed layer depth (MLD) as oceanographic factors for interannual variability of saury recruitment in early life history, we analyzed the relationship between abundance index (survey CPUE (catch per unit of effort)) of age-1 fish and the oceanographic factors in the spawning and nursery grounds of the previous year when they were born, for the period of 1979–2006, in the central and western North Pacific. Applying the mixture of two linear regression models, the variability in the survey CPUE was positively correlated with previous year's winter SST in the Kuroshio Recirculation region (KR) throughout the survey period except 1994–2002. In contrast, the survey CPUE was positively correlated with the previous year's spring MLD (a proxy of spring chlorophyll a (Chl-a) concentration) in the Kuroshio-Oyashio Transition and Kuroshio Extension (TKE) during 1994–2002. This period is characterized by unusually deep spring MLD during 1994–1997 and anomalous climate conditions during 1998–2002. We suggest that saury recruitment variability was generally driven by the winter SST in the KR (winter spawning/nursery ground), or by the spring Chl-a concentration (a proxy of prey for saury larvae) in the TKE (spring spawning/nursery ground). These oceanographic factors could be potentially useful to predict abundance trends of age-1 saury in the future if the conditions leading to the switch between SST and MLD as the key input variable are elucidated further.

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  • Climate change and interspecific interactions drive species alternations between anchovy and sardine in the western North Pacific: Detection of causality by convergent cross mapping 査読

    Shin Ichiro Nakayama, Akinori Takasuka, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Oceanography   27 ( 4 )   312 - 322   2018年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    The abundance and recruitment of anchovy Engraulis spp. and sardine Sardinops spp. alternate in a synchronized way across the Pacific. Convergent cross mapping (CCM) indicated that climate change drives the alternation of the two species in the California Current System. However, climate indices patterns in the western North Pacific contrast with those in the eastern North Pacific, despite synchronous species alternations occurring. Therefore, it is of great interest to clarify whether climate change, or any other factors, affects the population dynamics of Japanese anchovy and Japanese sardine in the western North Pacific. Using CCM, we tested whether climate change and interspecific interactions affect the population dynamics of these two species. We found that climate change affected recruitment, and we clarified the spatiotemporal pattern of this effect. This result supports the existing hypotheses that population dynamics are regulated by climate change in the western North Pacific. The present study also detected interspecific interactions between sardine and anchovy, which might promote the alternation of the two species, and has not been reported in other regions.

    DOI: 10.1111/fog.12254

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  • Impacts of the nonlinear relationship between abundance and its index in a tuned virtual population analysis 査読

    Midori Hashimoto, Hiroshi Okamura, Momoko Ichinokawa, Kazuhiko Hiramatsu, Takashi Yamakawa

    Fisheries Science   84 ( 2 )   335 - 347   2018年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER JAPAN KK  

    The abundance index used in a tuned virtual population analysis (VPA) is usually assumed to be proportional to actual abundance. However, the actual abundance and abundance index do not always have a linear relationship. Such nonlinearity can cause biases in abundance estimates as well as retrospective biases arising from systematic differences in abundance estimates when more data are successively added. Severe retrospective biases can damage the reliability of stock assessments. In this study, we use an approach to estimate an additional parameter that controls the nonlinearity in a tuned VPA. A performance test using simulated data revealed that the tuned VPA was able to accurately estimate the nonlinearity parameter and thus yielded less biased abundance estimates and smaller retrospective biases. We also found that estimating the nonlinearity parameters was effective even under other model misspecification scenarios, such as disregarding historical increases in catchability and time-varying natural mortality. Moreover, we applied this approach to some Japanese fish stocks and evaluated its validity. We found that estimating the nonlinearity parameters in the tuned VPA enhances the reliability of fisheries stock assessments.

    DOI: 10.1007/s12562-017-1159-0

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  • Target-based catch-per-unit-effort standardization in multispecies fisheries 査読

    Hiroshi Okamura, Shoko H. Morita, Tetsuichiro Funamoto, Momoko Ichinokawa, Shinto Eguchi

    Canadian Journal of Fisheries and Aquatic Sciences   75 ( 3 )   452 - 463   2018年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:CANADIAN SCIENCE PUBLISHING  

    Standardized catch per unit effort (CPUE) is a fundamental component of fishery stock assessment. In multispecies fisheries, catchability can differ depending on which species is being targeted, and so the yearly trend extracted from the standardized CPUE is likely to be biased. We have, therefore, developed a method for predicting the unobserved variable related to targeted species from among multispecies composition data using a mixture regression model for the transformed residuals. In contrast with traditional methods, the proposed method predicts the target variable in CPUE standardization without removing a subset of the data. Keeping the entire data set avoids information loss, and so CPUE standardization with the predicted target variable should yield an unbiased estimate of the yearly trend. Simple simulation tests demonstrate that our method outperforms traditional methods. We illustrate the use of our method by applying it to CPUE data on arabesque greenling (Pleurogrammus azonus) caught in multispecies trawl fisheries in Hokkaido, Japan.

    DOI: 10.1139/cjfas-2016-0460

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  • Properly designed effort management for highly fluctuating small pelagic fish populations: A case study in a purse seine fishery targeting chub mackerel 査読

    Momoko Ichinokawa, Hiroshi Okamura

    Marine Ecology Progress Series   2018   265 - 276   2018年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:INTER-RESEARCH  

    Proper fisheries management is difficult in fisheries targeting small pelagic fish that are subject to climate-induced oceanic regime shifts. A favourable regime tends to induce capa - city investments, but the results of these investments turn out to be irreducible overcapacity under the next unfavourable regime. The Japanese purse seine fishery studied here, which targets small pelagic fish, is a typical example of such overcapacity. However, we demonstrate that this fishery represents a best practice of properly designed effort management in recent years through its quantitative evaluation. Generalized liner mixed models (GLMMs) applied to daily logbook data revealed that effort restrictions on daily purse seine operations (in terms of the duration and the total number of operations per ship and day) significantly reduced total fishing efforts on chub mackerel. Stochastic simulations based on the parameters estimated in GLMMs quantified the extent of the potential catch reduction by the effort reductions at approximately 20%. Combined with the effect of another concurrently implemented management measure, i.e. day closures, the net effects of the effort management on the total catch reduction were estimated at 30%. Because the quota uptake percentages in this fishery were 60-80% during the study period, we conclude that the effort management helped avoid overshooting of the quota and consequent seasonal closures.

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  • Ridge virtual population analysis to reduce the instability of fishing mortalities in the terminal year 査読

    Hiroshi Okamura, Yuuho Yamashita, Momoko Ichinokawa

    ICES Journal of Marine Science   74 ( 9 )   2427 - 2436   2017年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Tuned virtual population analyses are widely used for fisheries stock assessments. However, accurately estimating abundances and fishing mortality coefficients in the terminal year using tuned virtual population analyses is generally difficult, particularly when there is a limited number of available abundance indices. We propose a new method of integrating the tuned virtual population analyses with a ridge regression approach. In our method, penalization in the ridge regression is applied to the age-specific fishing mortalities in the terminal year, and the penalty parameter is automatically selected by minimizing the retrospective bias. Therefore, our method is able to simultaneously obtain a stable estimation of fishing mortality coefficients in the terminal year and reduce retrospective bias. Simulation tests based on the northern Japan Sea stock of walleye pollock (Gadus chalcogrammus) in the Sea of Japan demonstrated that this method yielded less biased estimates of abundances and avoided overestimations of fishing mortality coefficients in the terminal year. In addition, despite limited abundance indices, our method can perform reliable abundance estimations even under hyperstability and hyperdepletion conditions.

    DOI: 10.1093/icesjms/fsx089

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  • Robust bias correction model for estimation of global trend in marine populations 査読

    Osamu Komori, Shinto Eguchi, Yusuke Saigusa, Hiroshi Okamura, Momoko Ichinokawa

    Ecosphere   8 ( 12 )   2017年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    In modeling biological and ecological processes from data, it is essential to deal with data selection bias properly in order to obtain reliable and reasonable predictions. To incorporate the mechanism of selection bias into a statistical analysis, a propensity score (PS) is widely employed as an inverse probability weight in order to obtain a consistent estimation of a binary response variable of interest. However, the estimation performance often becomes unstable due to the mis-estimation of the PS. In order to obtain a consistent estimation as well as to stabilize the estimation performance, we propose a new regression model that incorporates the PS as an explanatory variable. Moreover, we show that the proposed model has a the property of double robustness, which enables us to obtain a consistent estimation of the response without suffering from selection bias if either the PS model or the proposed model is correctly specified. The robust bias correction model also accommodates heterogeneity of data distributions based on an asymmetric logistic model, which in turn improves model fitting and prediction accuracy. The PS in our regression model enables us to estimate consistently the global fish stock status even if the information of the stock status available is biased.

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  • Incorporating accessibility limitation into the surplus production model 査読

    Shin Ichiro Nakayama, Seiji Akimoto, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Science   83 ( 3 )   353 - 365   2017年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER JAPAN KK  

    Limited access to aquatic populations hinders estimation of their status and establishment of effective management measures. We propose a modified surplus production model to cope with this problem. The model provides population parameters and biological reference points from a time series of annual accessible abundance data. Simulation tests showed that the model provided biological reference point estimates with little bias when sufficiently long time series were available. Even for short time series, we could obtain nearly unbiased estimates by providing information on the exploitation rate at the maximum sustainable yield (FMSY). As an application, we fit the modified surplus production model to 7-year accessible biomass estimates of a local population of Japanese spiky sea cucumber Apostichopus japonicus using a Bayesian approach. The results indicated that the stock in the area studied was likely to have experienced recent overfishing and had a high probability of being overfished in the future.

    DOI: 10.1007/s12562-017-1078-0

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  • The status of Japanese fisheries relative to fisheries around the world 査読

    Momoko Ichinokawa, Hiroshi Okamura, Hiroyuki Kurota

    ICES Journal of Marine Science   74 ( 5 )   1277 - 1287   2017年5月

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    記述言語:英語   出版者・発行元:OXFORD UNIV PRESS  

    We present the first quantitative review of the stock status relative to the stock biomass (B) and the exploitation rate (U) that achieved the maximum sustainable yield (MSY) (B MSY and U MSY, respectively) for 37 Japanese stocks contributing 61% of the total marine capture production in Japan. B MSY and U MSY were estimated by assuming three types of stock-recruitment (S-R) relationships and an age-structured population model or by applying a surplus production model. The estimated stock status shows that approximately half of the stocks were overfishing (U/U MSY > 1), and approximately half of the stocks were overfished (B/B MSY < 0.5) during 2011-2013. Over the past 15 years, U decreased and B slightly increased on average. The rate of decrease in the U of the stocks managed by the total allowable catch (TAC) was significantly greater than that of the other stocks, providing evidence of the effectiveness of TAC management in Japan. The above statuses and trends were insensitive to the assumption of the S-R relationship. The characteristics of Japanese stocks composed mainly of resources with relatively high natural mortality, i.e. productivity, suggest that Japanese fisheries have great potential of exhibiting a quick recovery and increasing their yield by adjusting the fishing intensity to an appropriate level.

    DOI: 10.1093/icesjms/fsx002

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  • Impacts of extensive driftnet fishery and late 1990s climate regime shift on dominant epipelagic nekton in the Transition Region and Subtropical Frontal Zone: Implications for fishery management 査読

    T. Ichii, H. Nishikawa, H. Igarashi, H. Okamura, K. Mahapatra, M. Sakai, T. Wakabayashi, D. Inagake, Y. Okada

    Progress in Oceanography   150   35 - 47   2017年1月

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    掲載種別:研究論文(学術雑誌)  

    We investigated the impacts of extensive anthropogenic (high seas driftnet squid fishery) and natural (late 1990s major climate regime shift) events on dominant epipelagic fish, squid, and shark in the central North Pacific Transition Region based on a driftnet survey covering the years 1979–2006. Fishing was conducted by Japan, Korea and Taiwan to target neon flying squid in the period 1979–1992, resulting in a decline in stocks of the target species and non-target species (Pacific pomfret and juvenile blue shark), which were by-catch of this fishery. The catch was found to be at the maximum sustainable yield (MSY) level for neon flying squid, the underfished level for juvenile blue shark, but the overfished level for Pacific pomfret. The MSY of Pacific pomfret indicated that this species is more susceptible to exploitation than previously considered. In response to the late 1990s regime shift, neon flying squid and Pacific saury showed low stock levels in 1999–2002 and 1998–2002, respectively, as a result of reduced productivity in their nursery grounds (the Subtropical Frontal Zone and Kuroshio Extension Bifurcation Region, respectively). On the other hand, Pacific pomfret showed no decreasing trend in stock during the low- and intermediate-productivity regimes because of the high productivity of their main spawning/nursery ground (Transition Zone Chlorophyll Front), which was independent of the regime shifts. Thus, squid and saury appear to be more susceptible to the regime shift than pomfret. We discuss the implications for stock management of the species-specific responses to the fishery and the regime shift.

    DOI: 10.1016/j.pocean.2015.03.007

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  • Risk assessment of radioisotope contamination for aquatic living resources in and around Japan 査読

    Hiroshi Okamura, Shiro Ikeda, Takami Morita, Shinto Eguchi

    Proceedings of the National Academy of Sciences of the United States of America   113 ( 14 )   3838 - 3843   2016年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATL ACAD SCIENCES  

    Food contamination caused by radioisotopes released from the Fukushima Dai-ichi nuclear power plant is of great public concern. The contamination risk for food items should be estimated depending on the characteristics and geographic environments of each item. However, evaluating current and future risk for food items is generally difficult because of small sample sizes, high detection limits, and insufficient survey periods. We evaluated the risk for aquatic food items exceeding a threshold of the radioactive cesium in each species and location using a statistical model. Here we show that the overall contamination risk for aquatic food items is very low. Some freshwater biota, however, are still highly contaminated, particularly in Fukushima. Highly contaminated fish generally tend to have large body size and high trophic levels.

    DOI: 10.1073/pnas.1519792113

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  • An asymmetric logistic regression model for ecological data 査読

    Osamu Komori, Shinto Eguchi, Shiro Ikeda, Hiroshi Okamura, Momoko Ichinokawa, Shinichiro Nakayama

    Methods in Ecology and Evolution   7 ( 2 )   249 - 260   2016年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Binary data are popular in ecological and environmental studies; however, due to various uncertainties and complexities present in data sets, the standard generalized linear model with a binomial error distribution often demonstrates insufficient predictive performance when analysing binary and proportional data. To address this difficulty, we propose an asymmetric logistic regression model that uses a new parameter to account for data complexity. We observe that this parameter controls the model's asymmetry and is important for adjusting the weights associated with observed data in order to improve model fitting. This model includes the ordinary logistic regression model as a special case. It is easily implemented using a slight modification of glm or glmer in statistical software R. Simulation studies suggest that our new approach outperforms a traditional approach in terms of both predictive accuracy and variable selection. In a case study involving fisheries data, we found that the annual catch amount had a greater impact on stock status prediction, and improved predictive capability was supported with a smaller AIC compared to a generalized linear model. In summary, our method can enhance the applicability of a generalized linear model to various ecological problems using a slight modification, and significantly improves model fitting and model selection.

    DOI: 10.1111/2041-210X.12473

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  • GPSテレメトリーによる測位間隔の違いがスイッチング状態空間モデル解析に与える影響の検討:大型陸上哺乳類の例 査読

    有本 勲, 小池 伸介, 岡村 寛, 山﨑 晃司, 梶 光一

    哺乳類科学   56 ( 1 )   5 - 16   2016年

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    記述言語:日本語   出版者・発行元:日本哺乳類学会  

    2000年代に普及したGPS(Global Positioning System)内蔵型首輪によって,以前より高精度かつ高頻度な陸上哺乳類の位置情報の測位データが得られるようになった.GPSの測位データを対象動物の行動解析に供するためには,GPSの観測誤差の補正と移動や滞在などの行動区分が重要な課題であり,それらを同時に処理できるモデルとして,スイッチング状態空間モデル(Switching state-space model,以下「SSSM」)が提案されている.GPSを用いた位置情報取得では,研究目的や電池寿命との兼ね合いによって様々な測位間隔が用いられるため,同じ解析を行っても測位間隔によって全く異なった結論が導かれる可能性がある.そこで,本研究では,ツキノワグマ<i>Ursus thibetanus</i>を例として,GPSによって5分間隔および30分間隔で測位したデータから様々な測位間隔のデータを発生させ,SSSMの推定結果に測位間隔が与える影響を検証した.その結果,SSSMとGPS首輪に内蔵された活動量センサーを組み合わせることにより,5分~120分間隔では,ツキノワグマの行動が移動,滞在中の探餌および休息の3つに区分された.しかし,240分~360分間隔では活動量センサーによる探餌と休息の区分が難しいことから,移動と滞在の2区分を使用するのが妥当と考えられた.また,集中利用地点を認識する時空間スケールは測位間隔が長くなるほど大きくなった.移動距離はいずれの測位間隔でも相対的な比較が可能であったが,位置情報が重要となる生息地選択の解析は30分以下の短い測位間隔を用いた方が良いことが明らかになった.SSSMは測位間隔を変えることによって様々な目的に供することができる.これまで,陸上哺乳類では詳細な時空間スケールでの研究に制限があったが,GPSで高頻度の測位データが得られること,SSSMで定量的な行動解析が可能となったことから,5分~30分間隔程度の短い間隔の測位データにSSSMを適用することでより多くの新たな知見が得られると期待される.

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  • Effective time closures: Quantifying the conservation benefits of input control for the Pacific chub mackerel fishery 査読

    Momoko Ichinokawa, Hiroshi Okamura, Chikako Watanabe, Atsushi Kawabata, Yoshioki Oozeki

    Ecological Applications   25 ( 6 )   1566 - 1584   2015年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Restricting human access to a specific wildlife species, community, or ecosystem, i.e., input control, is one of the most popular tools to control human impacts for natural resource management and wildlife conservation. However, quantitative evaluations of input control are generally difficult, because it is unclear how much human impacts can actually be reduced by the control. We present a model framework to quantify the effectiveness of input control using day closures to reduce actual fishing impact by considering the observed fishery dynamics. The model framework was applied to the management of the Pacific stock of the chub mackerel (Scomber japonicus) fishery, in which fishing was suspended for one day following any day when the total mackerel catch exceeded a threshold level. We evaluated the management measure according to the following steps: (1) we fitted the daily observed catch and fishing effort data to a generalized linear model (GLM) or generalized autoregressive state-space model (GASSM), (2) we conducted population dynamics simulations based on annual catches randomly generated from the parameters estimated in the first step, (3) we quantified the effectiveness of day closures by comparing the results of two simulation scenarios with and without day closures, and (4) we conducted additional simulations based on different sets of explanatory variables and statistical models (sensitivity analysis). In the first step, we found that the GASSM explained the observed data far better than the simple GLM. The model parameterized with the estimates from the GASSM demonstrated that the day closures implemented from 2004 to 2009 would have decreased exploitation fractions by ∼ 10% every year and increased the 2009 stock biomass by 37-46% (median), relative to the values without day closures. The sensitivity analysis revealed that the effectiveness of day closures was particularly influenced by autoregressive processes in the fishery data and by positive relationships between fishing effort and total biomass. Those results indicated the importance of human behavioral dynamics under input control in quantifying the conservation benefit of natural resource management and the applicability of our model framework to the evaluation of the input controls that are actually implemented.

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  • Long-term ecosystem change in the western North Pacific inferred from commercial fisheries and top predator diet 査読

    Shiroh Yonezaki, Masashi Kiyota, Hiroshi Okamura

    Deep-Sea Research Part II: Topical Studies in Oceanography   113   91 - 101   2015年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PERGAMON-ELSEVIER SCIENCE LTD  

    Assessment of the current status of marine ecosystems is necessary for the sustainable utilization of ecosystem services through fisheries and other human activities under changing environmental conditions. Understanding of historical changes in marine ecosystems can help us to assess their current status. In this study, we analyzed Japanese commercial fishery catch data and scientific survey data of the diet of northern fur seal (. Callorhinus ursinus, NFS) to investigate potential long-term ecosystem changes in the western North Pacific Ocean off northeastern Japan over the past 60 years. Total commercial catches experienced peaks around 1960 and during the 1980s, decreasing to low levels around 1970 and after 1990. Catches were substantively impacted by the Tohoku earthquake and tsunami in 2011. Species composition of the commercial catch changed over time, resulting in changes in the mean trophic level (MTL) of the catches. Trends in observed commercial catches were affected by many factors, including species population fluctuations potentially related to large-scale environmental shifts, migration and distribution patterns of species related to local oceanography, changes in fishing technology, and the introduction of fishery management frameworks. The composition of NFS diet also changed over time: although overall changes were small, MTL derived from NFS stomach contents declined from the early 1970s to the late 1980s. This fall in the MTL of the diet of NFS is suggestive of a shift in pelagic fish fauna from a "mackerel-dominant regime" to a "sardine-dominant regime". Inconsistencies between changes in species composition and MTLs of the commercial catch and NFS diet resulted from differences in commercial fishing targeting and NFS foraging behavior strategies. Although commercial catch is a valuable source of information for investigating historical changes in fisheries, biological resources, and ecosystems, catch data should be interpreted carefully and other relevant information available should also be considered.

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  • Convergent cross mappingの紹介 : 生態学における時系列間の因果関係推定法 査読

    中山 新一朗, 阿部 真人, 岡村 寛

    日本生態学会誌   65 ( 3 )   241 - 253   2015年

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    記述言語:日本語   出版者・発行元:日本生態学会暫定事務局  

    生態学者はしばしば、複数の時系列データからそれらの間に存在する因果関係を推定する必要に迫られる。しかし、生物学的事象は決定論的かつ非線形で複雑な過程を背景に持つのが一般的であり、そのような応答から生じた時系列データ間の因果関係を推定するのは非常に困難である。本稿では、このような状況において有効である因果関係推定法であるConvergent cross mappingについて、その仕組み、使い方、将来の課題等を解説する。

    DOI: 10.18960/seitai.65.3_241

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    その他リンク: https://agriknowledge.affrc.go.jp/RN/2010901124

  • 管理目標の数値化による最適な ABC 算定規則の探索 査読

    市野川 桃子, 岡村 寛, 黒田 啓行, 由上 龍嗣, 田中 寛繁, 柴田 泰宙, 大下 誠二

    日本水産学会誌   81 ( 2 )   206 - 218   2015年

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    記述言語:日本語   出版者・発行元:日本水産學會  

    絶対資源量が推定されていない我が国漁業資源の ABC 算定には,前年の漁獲量や資源水準,動向を利用した経験式(2 系ルール)が用いられている。本研究は,2 系ルールで使われる調整係数の最適な組み合わせを網羅的なシミュレーションから検討した。まず,資源の健全性と漁獲量の大きさを定量化する指標を用い,両者のトレードオフ関係を可視化した。さらに,両者を考慮した管理目標を定義し,目標の達成度を最大化する最適な調整係数の組み合わせが,モデルや使用する漁獲データの範囲によってどのように異なるかを検討した。<br>

    DOI: 10.2331/suisan.81.206

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  • Spatiotemporal catch distribution of age-0 Pacific bluefin tuna Thunnus orientalis caught by the Japanese troll fishery in relation to surface sea temperature and seasonal migration 査読

    Momoko Ichinokawa, Hiroshi Okamura, Kazuhiro Oshima, Kotaro Yokawa, Yukio Takeuchi

    Fisheries Science   80 ( 6 )   1181 - 1191   2014年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER JAPAN KK  

    This study used a delta-lognormal model to analyze monthly catches of age-0 Pacific bluefin tuna by the troll fishery. The model included fixed effects of month, area, and month-area interaction, and random effects of port, year and port-year interaction. The catch patterns by month and area predicted by the statistical model (standardized catch) revealed that main fishing grounds along the Tsushima Warm Current generally shifted from north to south as the season turned from autumn to winter. In contrast, the standardized catch along the Kuroshio Current did not show such clear spatiotemporal patterns. The standardized catch along the Tsushima Warm Current is significantly associated with average monthly sea surface temperatures in the fishing grounds and consistent with migration routes revealed by tagging experiments in previous studies. These associations indicate the spatiotemporal catch pattern in the Tsushima Warm Current region partly reflects seasonal migration. Knowledge of the possible associations among fish migration, environmental factors and spatiotemporal distribution of the catch will contribute to future management of this species.

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  • Evaluation of the sensitivity of biological reference points to the spatio-temporal distribution of fishing effort when seasonal migrations are sex-specific 査読

    Hiroshi Okamura, Murdoch K. McAllister, Momoko Ichinokawa, Lynne Yamanaka, Kendra Holt

    Fisheries Research   158   116 - 123   2014年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER  

    Offshore lingcod (Ophiodon elongatus) in British Columbia (BC) make seasonal migrations that differ by sex: in winter most adult males aggregate in shallow water and most adult females aggregate in deep water, while in summer both sexes distribute equally in deep and shallow water. We developed a semi-age structured delay-difference model that accommodates sex-, and age/depth-specific seasonal migration and examined the sensitivity of biological reference points for BC offshore lingcod to migration pattern and the allocation of fishing effort across seasons and depths. When a migration pattern with a homogeneous distribution of males and females in shallow and deep water throughout the year was assumed, the estimated maximum sustainable yield (MSY), biomass at MSY (BMSY), and percent spawning per recruitment at MSY (%SPRMSY) were robust to changes in effort allocation. However, when a migration pattern that assumed a winter distribution of 95% of adult males in shallow water and 95% of adult females in deep water was used, the estimated MSY, BMSY, and %SPRMSY were markedly sensitive to changes in effort allocation. These results suggest that incorporating sex-, age/depth-, and season-specific structuring in stock assessment models could enable improved evaluations of management options for BC lingcod and other species with sex- and season-specific migrations. © 2013 Elsevier B.V.

    DOI: 10.1016/j.fishres.2013.10.022

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  • Data conflict caused by model mis-specification of selectivity in an integrated stock assessment model and its potential effects on stock status estimation 査読

    Momoko Ichinokawa, Hiroshi Okamura, Yukio Takeuchi

    Fisheries Research   158   147 - 157   2014年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER  

    Integrated analysis is widely used for fisheries stock assessment. The analysis has several merits, including its prevention of the loss of information and its enabling of the evaluation of uncertainties that arise when integrating individual data, such as size composition data and abundance indices. However, the data integration itself causes one of the most difficult problems: conflicts among data sources. This paper provides an illustrative explanation of how data conflict can occur under model mis-specification on selectivity in a multi-fishery integrated stock assessment model through simulation with known parameters. We demonstrated that estimation bias can be caused under various scenarios of model mis-specifications on selectivity. Relative likelihood profiles decomposed into the likelihood components from different data sources revealed data conflicts among multiple datasets under the model mis-specifications, whereas the relative likelihood profiles displayed no severe data conflicts without any model mis-specifications. Data conflicts occurred because a single estimation model without correct selectivity assumptions cannot explain the observed multiple data sources simultaneously. We also found that almost all of the parameters estimated in the integrated model were potentially affected by the model mis-specification in any single component of selectivity for a specific fishery. If we accumulate empirical knowledge on the general patterns of conflicts and what types of data sources are robust against typical model mis-specifications, the relative likelihood profiles could be utilized more efficiently in diagnostics to identify potential model mis-specifications and to obtain more accurate estimates of the quantities of interest for stock management. © 2014 Elsevier B.V.

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  • VPAを用いた我が国水産資源評価の統計言語Rによる統一的検討 査読

    市野川 桃子, 岡村 寛

    水産海洋研究 = Bulletin of the Japanese Society of Fisheries Oceanography   78 ( 2 )   104 - 113   2014年5月

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    記述言語:日本語   出版者・発行元:水産海洋学会  

    我が国の主要種の漁業資源管理はTAC制度によって実施されており,その中の多くの資源評価にはコホート解析(VPA)が用いられている。本稿では,VPAを用いた資源評価からABC計算に至る一連の解析手法を,我が国の資源評価で使われている手法とそのバリエーションに焦点をあてて概観した。さらに,その際に必要なモデル診断やパラメータの不確実性の評価手法を紹介した。これら一連の解析は,筆者らが開発したRのパッケージ(RVPA)を用いて統一的に実施できるので,そのためのコード例も示した。モデル診断では,典型的な例を示して,予測値と残差の視覚的検証について解説した。パラメータの不確実性の評価では,尤度プロファイルとブートストラップ法を用いたパラメータの信頼区間の推定方法を紹介した。最後に,シミュレーションデータを用いて,VPA計算における仮定の違いが,親魚資源量や管理基準値の推定値に与える影響を示した。

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  • 集落周辺に生息するツキノワグマの行動と利用環境 査読

    有本 勲, 岡村 寛, 小池 伸介, 山﨑 晃司, 梶 光一

    哺乳類科学   54 ( 1 )   19 - 31   2014年

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    記述言語:日本語   出版者・発行元:日本哺乳類学会  

    近年,ツキノワグマ(<i>Ursus thibetanus</i>)の分布拡大に伴い人間活動との軋轢が増加しているが,集落周辺におけるツキノワグマの生態に関する知見は限られている.そこで,2010年から2011年に7頭のツキノワグマにGPS首輪を装着し,得られた位置情報にスイッチング状態空間モデルを適用し,移動軌跡の平滑化,および活動量センサーを併用して「移動」・「活動中の滞在」・「休息中の滞在」への行動区分を行った.さらに,「活動中の滞在」とされた測位点が集中した地域を現地踏査し,植生や生活痕跡を記録した.ツキノワグマは,多くの個体は夏前期および夏後期に集落に近い場所を利用し,秋期には集落から遠い場所を利用した.一方,個体によっては,これらの傾向に当てはまらない個体もみられた.集落から遠い場所では夏後期はアリ類やサクラ類の果実,秋期はミズナラの果実が多く採食されたのに対し,集落に近い場所では,夏後期はオニグルミやクリ,秋期はカキノキの果実が多く採食された.また,集落の近くでは夜間の活動割合が増加した.以上より,ツキノワグマは,食物資源の分布の季節変化に応じて季節的に集落に近い場所を利用し,特に集落周辺に自然状態とは異なった状況で,特異に集中的に食物が存在する状況下では,多くの個体が集落の周辺を利用していた.

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  • Measurement of diet preference and its variability in captive northern fur seals (Callorhinus ursinus) 査読

    Masashi Kiyota, Hiroshi Okamura, Hiroya Itou, Noriyasu Suzuki, Kaoru Kohyama

    MAMMAL STUDY   38 ( 3 )   199 - 210   2013年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:MAMMALOGICAL SOC JAPAN  

    Diet preferences of three captive northern fur seals for seven prey items (Okhotsk atka mackerel, rainbow trout, common mackerel, walleye pollock, Pacific sand lance, horse mackerel, and Japanese common squid) were measured through repeated two-choice tests. Preference indices estimated from the paired consumption data using the normal Bradley-Terry model revealed the existence of diet preferences and their individual variation. The three seals generally preferred Okhotsk atka mackerel, rainbow trout, and common mackerel, but showed individual differences for less preferred food items. The preferred items had moderate food size and high energy content per one item. Once diet preferences were determined, animals were given rainbow trout laced with lithium chloride (LiCl) to induce conditioned taste aversion (CTA). Four to five LiCl treatments were required for CTA, but could only induce temporary aversion of rainbow trout in favor of horse mackerel. Choice tests after CTA demonstrated a decrease in preference indices for rainbow trout in the three animals, but the ranking and preference indices of rainbow trout did not fall below those for horse mackerel. These results suggest that preference and aversion are relative phenomena, and the success of CTA is dependent on the reduction of preference relative to other food items.

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  • Abundance Estimation of Long-Diving Animals Using Line Transect Methods (vol 68, pg 504, 2012) 査読

    Hiroshi Okamura, Shingo Minamikawa, Hans J. Skaug, Toshiya Kishiro

    BIOMETRICS   69 ( 2 )   555 - 555   2013年6月

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    記述言語:英語   出版者・発行元:WILEY-BLACKWELL  

    DOI: 10.1002/biom.12048

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  • Marginal increment analysis: A new statistical approach of testing for temporal periodicity in fish age verification 査読

    H. Okamura, A. E. Punt, Y. Semba, M. Ichinokawa

    Journal of Fish Biology   82 ( 4 )   1239 - 1249   2013年4月

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    掲載種別:研究論文(学術雑誌)  

    This paper proposes a new and flexible statistical method for marginal increment analysis that directly accounts for periodicity in circular data using a circular-linear regression model with random effects. The method is applied to vertebral marginal increment data for Alaska skate Bathyraja parmifera. The best fit model selected using the AIC indicates that growth bands are formed annually. Simulation, where the underlying characteristics of the data are known, shows that the method performs satisfactorily when uncertainty is not extremely high. © 2013 The Authors. Journal of Fish Biology © 2013 The Fisheries Society of the British Isles.

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  • アサリの非対称殻模様出現頻度における地域差 査読

    張 成年, 山本 敏博, 渡辺 一俊, 藤浪 祐一郎, 兼松 正衛, 長谷川 夏樹, 岡村 寛, 水田 浩治, 宮脇 大, 秦 安史, 櫻井 泉, 生嶋 登, 北田 修一, 谷本 尚史, 羽生 和弘, 小林 豊, 鳥羽 光晴

    日本水産學會誌 = Bulletin of the Japanese Society of Scientific Fisheries   79 ( 2 )   190 - 197   2013年3月

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    記述言語:日本語   出版者・発行元:日本水産學會  

    アサリ殻模様の非対称性は優性遺伝形質である。非対称型(A)頻度は北海道と関東周辺で高く(14.5~28.1%),東北,浜名湖以西,中国で低かった(0~9.9%)。千葉県盤州では A 型頻度が低いと考えられる地域のアサリが 2007 年まで放流されてきた。盤洲の 2005 年度標本では殻長 20 mm 未満で A 型が 22%,25 mm 以上で 0% であり大型グループで放流個体が多いことが示されたが,2011 年以降の標本ではサイズによらず A 型が 17.2~20.3% 見られ,放流個体による遺伝的攪乱が限定的であることが示された。<br>

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  • A generalized model for overdispersed count data 査読

    Hiroshi Okamura, André E. Punt, Tatsuya Amano

    Population Ecology   54 ( 3 )   467 - 474   2012年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Overdispersed count data are very common in ecology. The negative binomial model has been used widely to represent such data. Ecological data often vary considerably, and traditional approaches are likely to be inefficient or incorrect due to underestimation of uncertainty and poor predictive power. We propose a new statistical model to account for excessive overdisperson. It is the combination of two negative binomial models, where the first determines the number of clusters and the second the number of individuals in each cluster. Simulations show that this model often performs better than the negative binomial model. This model also fitted catch and effort data for southern bluefin tuna better than other models according to AIC. A model that explicitly and properly accounts for overdispersion should contribute to robust management and conservation for wildlife and plants. © 2012 The Society of Population Ecology and Springer.

    DOI: 10.1007/s10144-012-0319-4

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  • Erratum: Changes in abundance of the neon flying squid Ommastrephes bartramii in relation to climate change in the central North Pacific Ocean (Marine Ecology Progress Series (2011) 441 (151-164))

    Taro Ichii, Kedarnath Mahapatra, Mitsuo Sakai, Toshie Wakabayashi, Hiroshi Okamura, Hiromichi Igarashi, Denzo Inagake, Yoshihiro Okada

    Marine Ecology Progress Series   457   302   2012年6月

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    掲載種別:研究論文(学術雑誌)  

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  • Abundance Estimation of Long-Diving Animals Using Line Transect Methods 査読

    Hiroshi Okamura, Shingo Minamikawa, Hans J. Skaug, Toshiya Kishiro

    Biometrics   68 ( 2 )   504 - 513   2012年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Line transect sampling is one of the most widely used methods for estimating the size of wild animal populations. An assumption in standard line transect sampling is that all the animals on the trackline are detected without fail. This assumption tends to be violated for marine mammals with surfacing/diving behaviors. The detection probability on the trackline is estimated using duplicate sightings from double-platform line transect methods. The double-platform methods, however, are insufficient to estimate the abundance of long-diving animals because these animals can be completely missed while the observers pass. We developed a more flexible hazard probability model that incorporates information on surfacing/diving patterns obtained from telemetry data. The model is based on a stochastic point process and is statistically tractable. A simulation study showed that the new model provides near-unbiased abundance estimates, whereas the traditional hazard rate and hazard probability models produce considerably biased estimates. As an illustration, we applied the model to data on the Baird's beaked whale (Berardius bairdii) in the western North Pacific. © 2011, The International Biometric Society.

    DOI: 10.1111/j.1541-0420.2011.01689.x

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  • Hierarchical models for smoothed population indices: The importance of considering variations in trends of count data among sites 査読

    Tatsuya Amano, Hiroshi Okamura, Savrina F. Carrizo, William J. Sutherland

    Ecological Indicators   13 ( 1 )   243 - 252   2012年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCIENCE BV  

    Population indices quantify changes in relative population sizes, which underpin much of basic ecology and conservation science. However, temporal changes in population counts may vary among survey sites for both ecological and artificial reasons, confounding existing population indices estimated without accounting for such variations. We created a smoothed hierarchical model, and compared its performance against the conventional approaches (generalized linear models and generalized additive models) and a non-smoothed hierarchical model using simulation data with a known nonlinear trend. The smoothed hierarchical model always estimated population indices with the best accuracy and precision; the performance of other models deteriorated substantially with increasing variation in trends of population counts among sites, causing inaccurate estimation of population growth rates. The estimated variations in trends of population counts among sites for 233 out of 518 North American breeding bird species were larger than the value used in the simulation where there was a considerable difference in the performance between hierarchical models and the conventional approaches. These estimated variations in trends of population counts among sites were particularly large in gregarious waterbirds. These results suggest that the smoothed hierarchical model developed in this study should play an important role in accurately assessing population indices, particularly for gregarious waterbirds, using count data from large-scale, long-term surveys in the field. © 2011 Elsevier Ltd.

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  • A bootstrap method for testing equality of peak months 査読

    Hiroshi Okamura, Akinori Takasuka

    Population Ecology   54 ( 1 )   169 - 176   2012年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER TOKYO  

    When ecological traits differ seasonally among biological groups, environmental adaptation is expected. However, current analytical methods for such seasonal data ignore the circular nature of data and therefore are likely to be flawed. We propose a simple bootstrap hypothesis test which statistically quantifies the presence/absence of differences in peak months for multiple groups taking the circular nature of the data into account. The test is based on a robust distribution-free method. Simulations showed that the test gives a satisfactory performance. The test is illustrated using data for anchovy and sardine egg abundances in the western North Pacific. © 2011 The Society of Population Ecology and Springer.

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  • A note on the von Bertalanffy growth function concerning the allocation of surplus energy to reproduction 査読

    Shuhei Ohnishi, Takashi Yamakawa, Hiroshi Okamura, Tatsuro Akamine

    Fishery Bulletin   110 ( 2 )   223 - 229   2012年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATL MARINE FISHERIES SERVICE SCIENTIFIC PUBL OFFICE  

    We propose an extended form of the von Bertalanffy growth function (VBGF), where the allocation of surplus energy to reproduction is considered. Any function can be used in our model to describe the ratio of energy allocation for reproduction to that for somatic growth. As an example, two models for energy allocation were derived: a step-function and a logistic function. The extended model can jointly describe growth in adult and juvenile stages. The change in growth rate between the two stages can be either gradual or steep; the latter gives a biphasic VBGF. The results of curve fitting indicated that a consideration of reproductive energy is meaningful for model extension. By controlling parameter values, our comprehensive model gives various growth curve shapes ranging from indeterminate to determinate growth. An increase in the number of parameters is unavoidable in practical applications of this new model. Additional information on reproduction will improve the reliability of model estimates.

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  • A macro-scale perspective on within-farm management: How climate and topography alter the effect of farming practices 査読

    Tatsuya Amano, Yoshinobu Kusumoto, Hiroshi Okamura, Yuki G. Baba, Kenji Hamasaki, Koichi Tanaka, Shori Yamamoto

    Ecology Letters   14 ( 12 )   1263 - 1272   2011年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY-BLACKWELL  

    Organic farming has the potential to reverse biodiversity loss in farmland and benefit agriculture by enhancing ecosystem services. Although the mixed success of organic farming in enhancing biodiversity has been attributed to differences in taxa and landscape context, no studies have focused on the effect of macro-scale factors such as climate and topography. This study provides the first assessment of the impact of macro-scale factors on the effectiveness of within-farm management on biodiversity, using spiders in Japan as an example. A multilevel modelling approach revealed that reducing pesticide applications increases spider abundance, particularly in areas with high precipitation, which were also associated with high potential spider abundance. Using the model we identified areas throughout Japan that can potentially benefit from organic farming. The alteration of local habitat-abundance relations by macro-scale factors could explain the reported low spatial generality in the effects of organic farming and patterns of habitat association. © 2011 Blackwell Publishing Ltd/CNRS.

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  • Changes in abundance of the neon flying squid Ommastrephes bartramii in relation to climate change in the central North Pacific Ocean 査読

    Taro Ichii, Kedarnath Mahapatra, Mitsuo Sakai, Toshie Wakabayashi, Hiroshi Okamura, Hiromichi Igarashi, Denzo Inagake, Yoshihiro Okada

    Marine Ecology Progress Series   441   151 - 164   2011年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:INTER-RESEARCH  

    Interannual changes in abundance of the autumn cohort of neon flying squid Ommastraphes bartramii during 1979 to 2006 were examined in relation to the large-scale climate shift in the central North Pacific Ocean. Catch per unit of effort (CPUE) of driftnet surveys, which is assumed to reflect the squid stock level, was very low during 1999 to 2002, which was an anomalous climate period. Given that the autumn cohort uses productive areas near and north of the transition zone chlorophyll front (TZCF) as favorable nursery and feeding grounds, we examined 3 covariates-(1) the winter position of the TZCF in the neon flying squid nursery ground, (2) the summer position of the TZCF in the feeding ground and (3) fishing mortality-to estimate which covariates were significantly correlated with low CPUE time periods. Multiple linear regression analysis suggested that only the effect of winter position of the TZCF in the nursery ground best predicted the change in the CPUE. The anomalous climate conditions caused a significant reduction in net primary production over an extended area within the subtropical frontal zone (STFZ), which is the main nursery ground for the autumn cohort. Hence, we assume that food availability for juvenile neon flying squid could be critical for the level of stock recruitment of this cohort. Furthermore, the sea level anomaly (SLA), which is considered to be a useful index of variability in the upper ocean structure, significantly correlated to the CPUE during spawning and nursery periods in the STFZ. Our study supports the hypothesis that the bottom-up effect of the climate shift can be manifested rapidly in neon flying squid, indicating that squid abundance can act as a productivity integrator and a real-time ecosystem indicator that respond to large-scale environment changes. © Inter-Research 2011.

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  • Long-term abundance trends of the northern form of the short-finned pilot whale (Globicephala macrorhynchus) along the Pacific coast of Japan 査読

    Yu Kanaji, Hiroshi Okamura, Tomio Miyashita

    Marine Mammal Science   27 ( 3 )   477 - 492   2011年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    The abundance of the northern form of the short-finned pilot whale, Globicephala macrorhynchus, in the Pacific waters of northern Japan was estimated from a line transect survey conducted in 2006 and data from seven previous surveys collected between 1985 and 1997. To overcome the difficulty of small sample size and inconsistency in survey design, we used an adjustment method using multiple covariates and sensitivity analysis by considering several scenarios. Abundance estimates showed similar long-term trends among scenarios. The northern form of G. macrorhynchus was more abundant in 1985 than in 1991-2006. The annual catch of the northern form of G. macrorhynchus exceeded the potential biological removal (PBR), especially in the 1980s. Thus, the commercial take in the early 1980s was suspected as a partial cause of a serious abundance decrease. These results provide valuable information for interpreting the impacts of coastal whaling, and to develop future management plans. © 2010 by the Society for Marine Mammalogy.

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  • 生物群集解析のための類似度とその応用 : Rを使った類似度の算出、グラフ化、検定 査読

    土居 秀幸, 岡村 寛

    日本生態学会誌   61 ( 1 )   3 - 20   2011年

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    記述言語:日本語   出版者・発行元:日本生態学会暫定事務局  

    群集生態学では、古くから類似度指数を用いた解析が頻繁に用いられてきた。しかし近年、汎用性の高い新たな類似度や検定手法が提案されているにもかかわらず、それらが十分に普及し利用されているとは言い難い。そこで、本総説では、現在までに発表されている代表的で有用な類似度、それを使ったグラフ表示、統計的検定について解説を行う。各類似度の成り立ち、指数ごとの特性、利用方法について初学者向けの説明を試みる。各種手法の理解の助けのため、統計ソフトRのveganパッケージを用いた分析を取り上げ、例題や付録のRコードを用いてveganによる解析手順を紹介する。利用実態としては、Jaccard指数など古くから提案されている指数が近年でも多く用いられているが、Chaoによって近年開発された指数は希少種を考慮した汎用性の高い類似度指数として優れており、Chao指数の利用が促進されることが望ましい。また、類似度を用いた検定についてもPERMANOVAなどの新しい統計手法の利用が図られるべきである。今後の群集解析において、これらの手法が取り入れられることにより、より適切な生態系の評価が行われ、新たな発見につながることが期待される。

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  • Asymptotic bias of the hazard probability model under model mis-specification 査読

    Tore Selland Kleppe, Hans J. Skaug, Hiroshi Okamura

    Journal of Cetacean Research and Management   11 ( 3 )   249 - 252   2010年12月

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    掲載種別:研究論文(学術雑誌)  

    We compare the sensitivity of the estimated effective strip half-width with respect to choice of hazard probability function (Q). This is done by fitting the model underan erroneous assumption about the parametric form of Q, and comparing the estimated and true effective strip half-width. An 'infinite sample size' setting is employed, where fitting the model by maximum likelihood amounts to minimising the Kullback Leibler distance between the assumed and true models. The experiment is carried out in a situation that is relevant to minke whale sighting surveys both in the Antarctic and in the northeastern Atlantic. It is found that the hazard probability model is fairly robust with respect to the choice of parametric class for Q. The largest observed bias in the resulting effective strip half-width is less than 10%, while for most situations there is almost no bias.

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  • 黒潮親潮移行域および親潮域におけるマサバおよびゴマサバの胃排出速度と日間摂餌量の推定 査読

    中束 明佳, 川端 淳, 高須賀 明典, 久保田 洋, 岡村 寛, 大関 芳沖

    水産海洋研究   74 ( 2 )   105 - 117   2010年5月

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    記述言語:日本語   出版者・発行元:水産海洋学会  

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  • Patchiness structure and mortality of pacific saury cololabis saira larvae in the northwestern pacific 査読

    Yoshioki Oozeki, Akinori Takasuka, Hiroshi Okamura, Hiroshi Kubota, Ryo Kimura

    Fisheries Oceanography   18 ( 5 )   328 - 345   2009年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY  

    Patchiness structure and mortality rates of Pacific saury Cololabis saira larvae were estimated in the frontal area of the Kuroshio Extension in spring 2000 and 2001. Drogued GPS buoys, which were used as Lagrangian reference points, were deployed to mark dense patches of saury larvae and a series of samplings was conducted using a neuston net around the buoys during the night over a period of several days. A total of 225 tows were conducted and 11 690 specimens were sampled during four buoy tracking. Despite the occurrence of water diffusion, patchiness density, distance between adjacent patches and patch size estimated by geostatistical analysis did not drastically change during the buoy tracking and these parameters were robust for the difference of variogram models and the threshold larval density defining patchiness. Such a stability of the patchiness allowed the estimation of larval mortality from the decrease of larval density for different size classes with respect to individual growth based on the samples taken repeatedly during the buoy tracking. Although low or negative values were obtained for the larvae right after hatching, probably due to continuous hatching, the estimates of mortality then increased and became stable in the range of 23-37% day-1 with a small standard deviation until their knob length reached to 36 mm. In situ information on the patchiness structure and larval mortality provides crucial parameters for simulating the recruitment process of small pelagic fishes in high-resolution hydrodynamic models.

    DOI: 10.1111/j.1365-2419.2009.00514.x

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  • A novel statistical method for validating the periodicity of vertebral growth band formation in elasmobranch fishes 査読

    Hiroshi Okamura, Yasuko Semba

    Canadian Journal of Fisheries and Aquatic Sciences   66 ( 5 )   771 - 780   2009年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:CANADIAN SCIENCE PUBLISHING  

    A simple age verification method is presented for centrum edge analysis (CEA) of elasmobranch species. In this method, a binomial model is linked with a von Mises distribution for circular data, taking the characteristics of the CEA data into account. The periodicity of growth band pairs is categorized as no cycle, an annual cycle, or a biannual cycle. Three models are then constructed according to different periodicities. We use the Akaike information criterion (AIC) to determine which model is the best. The models were applied to the shortfin mako shark (Isurus oxyrinchus) data collected in the North Pacific to identify the best periodicity model. The AIC best-fitting model was one involving an annual cycle. The general performance of the method was evaluated using simulated data of various sample sizes, formation times, and durations of growth band pairs. The simulation trials showed that the performance of the method was satisfactory with moderate sample sizes. This method should improve the accuracy of age determination and could be applied to all species that have periodic growth band pairs.

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  • Effect of bait species and color on sea turtle bycatch and fish catch in a pelagic longline fishery 査読

    Kosuke Yokota, Masashi Kiyota, Hiroshi Okamura

    Fisheries Research   97 ( 1-2 )   53 - 58   2009年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER  

    The effects of bait species (mackerel and squid) and color (blue-dyed and non-dyed) on the loggerhead turtle Caretta caretta bycatch in a pelagic longline fishery in the western North Pacific were assessed in shallow-set longline fishing experiments. The loggerhead turtle catches were analyzed using a generalized linear model (GLM) with a Poisson distribution. The potential factors (bait species, bait color, other species catch, and sea surface temperature) affecting loggerhead turtle catch were incorporated as explanatory variables. The model analyses indicated that bait species affected loggerhead turtle catch, while bait color did not. The model predicted that catch rates of loggerhead turtles were 75% less on mackerel bait to squid bait. This study demonstrated that fish bait choice was very effective in reducing loggerhead turtle bycatch in pelagic longline fisheries, but that the use of blue-dyed bait was not. Similar model analyses were also performed on target and by-product fish species, such as swordfish Xiphias gladius, striped marlin Tetrapturus audax, bigeye tuna Thunnus obesus, blue shark Prionace glauca, and shortfin mako shark Isurus oxyrinchus, and other non-target species. The remarkable differences between bait species and color that were found for loggerhead turtles were not found for these species catches. © 2009 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.fishres.2009.01.003

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  • A resource selection model for analyzing pseudoreplicated data due to grouping behavior of animals 査読

    岡村 寛

    Journal of Agricultural, Biological, and Environmental Statistics 13   13 ( 3 )   294 - 312   2008年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1198/108571108X337817

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    その他リンク: https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19780156/

  • Toward sustainable management of small cetacean fisheries around Japan 査読

    岡村 寛

    Fisheries Science 74(4)   74 ( 4 )   718 - 729   2008年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1111/j.1444-2906.2008.01582.x

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  • Provisioning strategies of Antarctic fur seals and chinstrap penguins produce different responses to distribution of common prey and habitat 査読

    Taro Ichii, John L. Bengtson, Peter L. Boveng, Yoshimi Takao, John K. Jansen, Lisa M. Hiruki-Raring, Michael F. Cameron, Hiroshi Okamura, Tomonari Hayashi, Mikio Naganobu

    Marine Ecology Progress Series   344   277 - 297   2007年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:INTER-RESEARCH  

    Central-place foragers that must return to a breeding site to deliver food to offspring are faced with trade-offs between prey patch quality and distance from the colony. Among colonial animals, pinnipeds and seabirds may have different provisioning strategies, due to differences in their ability to travel and store energy. We compared the foraging areas of lactating Antarctic fur seals and chinstrap penguins breeding at Seal Island, Antarctica, to investigate whether they responded differently to the distribution of their prey (Antarctic krill and myctophid fish) and spatial heterogeneity in their habitat. Dense krill concentrations occurred in the shelf region near the colony. However, only brooding penguins, which are expected to be time-minimizers because they must return frequently with whole food for their chicks, foraged mainly in this proximal shelf region. Lactating fur seals and incubating penguins, which can make longer trips to increase energy gain per trip, and so are expected to be energy-maximizers, foraged in the more distant (>20 km from the island) slope and oceanic regions. The shelf region was characterized by more abundant, but lower-energy-content immature krill, whereas the slope and oceanic regions had less abundant but higher-energy-content gravid krill, as well as high-energy-content myctophids. Furthermore, krill in the shelf region undertook diurnal vertical migration, whereas those in the slope and oceanic regions stayed near the surface throughout the day, which may enhance the capture rate for visual predators. Therefore, we suggest that the energy-maximizers foraged in distant, but potentially more profitable feeding regions, while the time-minimizers foraged in closer, but potentially less profitable regions. Thus, time and energy constraints derived from different provisioning strategies may result in sympatric colonial predator species using different foraging areas, and as a result, some central-place foragers use suboptimal foraging habitats, in terms of the quality or quantity of available prey. © Inter-Research 2007.

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  • Prey selection of common minke (Balaenoptera acutorostrata) and Bryde's (Balaenoptera edeni) whales in the western North Pacific in 2000 and 2001 査読

    Hiroto Murase, Tsutomu Tamura, Hiroshi Kiwada, Yoshihiro Fujise, Hikaru Watanabe, Hiroshi Ohizumi, Shiroh Yonezaki, Hiroshi Okamura, Shigeyuki Kawahara

    Fisheries Oceanography   16 ( 2 )   186 - 201   2007年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY-BLACKWELL  

    A study of common minke and Bryde's whales was conducted in the western North Pacific in the 2000 and 2001 summer seasons to estimate prey selection of cetaceans as this is an important parameter in ecosystem models. Whale sighting and sampling surveys and prey surveys using quantitative echosounder and mid-water trawl were carried out concurrently in the study. Biomasses of Japanese anchovy, walleye pollock and krill, which were major prey species of common minke and Bryde's whales, were estimated using an echosounder. The results suggested that common minke whale showed prey selection for Japanese anchovy while they seemed to avoid krill in both the offshore and coastal regions and walleye pollock in the continental shelf region. Selection for shoaling pelagic fish was similar to that in the eastern North Atlantic. Bryde's whale showed selection for Japanese anchovy in August 2000 and July 2001, while it showed prey selection for krill in May and June in 2001. © 2007 The Authors.

    DOI: 10.1111/j.1365-2419.2006.00426.x

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  • Effect of surfacing patterns on abundance estimates of long-diving animals 査読

    Hiroshi Okamura, Shingo Minamikawa, Toshihide Kitakado

    Fisheries Science   72 ( 3 )   631 - 638   2006年6月

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    掲載種別:研究論文(学術雑誌)  

    Population sizes of long-diving marine mammals can be estimated with minimal bias using line transect sampling techniques in conjunction with data on surfacing/diving, even though the detection probability on the trackline is considerably less than 1. Using a simulation, it was investigated whether population sizes can be accurately estimated when only the mean cue production rate, without information on surfacing/diving patterns, is available. In addition, a new model that incorporates information on surfacing/diving patterns into the estimation procedure was developed. The simulation showed that the new model can provide less biased abundance estimates, whereas neglecting surfacing/diving patterns can result in serious underestimates of abundance, in particular for long-diving animals.

    DOI: 10.1111/j.1444-2906.2006.01193.x

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  • Stock assessment of the autumn cohort of neon flying squid (Ommastrephes bartramii) in the North Pacific based on past large-scale high seas driftnet fishery data 査読

    Taro Ichii, Kedarnath Mahapatra, Hiroshi Okamura, Yoshihiro Okada

    Fisheries Research   78 ( 2-3 )   286 - 297   2006年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    In the high seas of the North Pacific, large-scale squid driftnet fisheries targeted the autumn cohort of neon flying squid (Ommastrephes bartramii) from May to mid-September. Total annual catches during 1982-1992 ranged from 102,000 to 209,000 t (149,000 t on average). To assess the effect of intensive commercial driftnet fishing on this cohort, we assessed the stock based on past driftnet fishing data. We used three different methods to estimate stock size during the high fishing season (July) for the driftnet fishing ground between 170°E and 145°W during 1982-1992. We found remarkable agreement in average stock estimates based on the three methods, with estimates of 380,000 t by the swept area method, 367,000 t by the DeLury method, and 333,000 t by the non-equilibrium surplus-production method. Of the three estimates, the swept area estimate was likely to be the most reliable because of the more realistic assumptions and reduced uncertainty of parameters in this method. The relative fishing mortality F/FMSY derived from the production model was 0.8-1.2, which was around the appropriate (maximum sustainable yield) fishing level (1.0), even during 1987-1990 when catches were large. The proportional escapement (number of squid alive at the end of the fishing season as a proportion of those that would have been alive had there been no fishing) was 18-64%, with an average of 42%, which was around the management target of 40%, even during this period. Thus, the large-scale driftnet fishery is considered to have been sustainable. Possible adverse effects of the driftnet fishery on food webs in the North Pacific are discussed. © 2006 Elsevier B.V. All rights reserved.

    DOI: 10.1016/j.fishres.2006.01.003

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  • Harassment, abduction, and mortality of pups by nonterritorial male northern fur seals 査読

    Masashi Kiyota, Hiroshi Okamura

    Journal of Mammalogy   86 ( 6 )   1227 - 1236   2005年12月

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    掲載種別:研究論文(学術雑誌)  

    Infant abuse by males has been observed in many pinniped species, but its adaptive significance and defense mechanism remain uncertain. We studied harassment and abduction of pups by nonterritorial male northern fur seals (Callorhinus ursinus) on St. Paul Island, Alaska, from 1993 to 1998. Juvenile, subadult, and adult males entered the breeding area and sniffed, bit, grabbed, or mounted pups. They also abducted pups to other places on land or to sea. Three pup mortalities caused by drowning, skull damage, or separation from the mother leading to emaciation were observed during the study period. Nonterritorial males did not exhibit a preference for the sexes of pups they attacked, and never consumed dead pups. Intrusions of juvenile and subadult males into breeding areas increased in the late breeding season, when harassment and abduction of pups occurred frequently. Frequency of intrusion and harassment of pups by adult nonterritorial males was lower than that by juvenile and subadult males, and did not increase in the late breeding season. On average, each pup was harassed or abducted 3.8 times in a breeding season. Pups changed their behavior to avoid nonterritorial males as pups moved out of the central breeding area in the late breeding season. Territorial males protected pups indirectly through territory defense, but their vigilance against juvenile and subadult males diminished in the late breeding season. Adult females protected their pups against juvenile and subadult males only while they were attending pups within the breeding territories. However, formation of breeding aggregation in rocky habitats may contribute to reducing the risk of harassment of pups by nonterritorial males because it provides pups with protection by territorial males as well as shelters created by irregular terrain. © 2005 American Society of Mammalogists.

    DOI: 10.1644/04-MAMM-A-031R2.1

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  • 資源選択性の統計解析-II : 各種解析法の紹介 査読

    清田 雅史, 岡村 寛, 米崎 史郎, 平松 一彦

    哺乳類科学 = Mammalian Science   45 ( 1 )   1 - 24   2005年6月

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    記述言語:日本語   出版者・発行元:日本哺乳類学会  

    DOI: 10.11238/mammalianscience.45.1

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  • An improved method for line transect sampling in the Antarctic minke whale surveys 査読

    OKAMURA H

    J. Cetacean Res. Manage   7 ( 2 )   97 - 106   2005年

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    担当区分:筆頭著者, 責任著者  

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  • 資源選択性の統計解析 : I. 基礎的な概念と計算方法 査読

    清田 雅史, 岡村 寛, 米崎 史郎, 平松 一彦

    哺乳類科学 = Mammalian Science   44 ( 2 )   129 - 146   2004年12月

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    記述言語:日本語   出版者・発行元:日本哺乳類学会  

    DOI: 10.11238/mammalianscience.44.129

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  • A line transect method to estimate abundance of long-diving animals 査読

    Hiroshi Okamura

    Fisheries Science   69 ( 6 )   1176 - 1181   2003年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Long-diving marine mammals, such as sperm whales and Baird's beaked whales are frequently missed in line transect sampling even though they are on the trackline. The methods so far developed to estimate the proportion of animals missed on the trackline are complicated or sensitive to model assumptions. A simpler model is developed in the present study. The model requires an estimate of mean surfacing rate that is independent of the line transect survey and does not require any complicated survey design and non-robust parameters, such as scan rate of the binoculars of observers. In addition, it can flexibly take account of systematic heterogeneity using covariates. The abundance is estimated using the Horvitz-Thompson estimator. The simulation test showed that the proposed method is promising.

    DOI: 10.1111/j.0919-9268.2003.00743.x

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  • Abundance estimation of diving animals by the double-platform line transect method 査読

    Hiroshi Okamura, Toshihide Kitakado, Kazuhiko Hiramatsu, Mitsuyo Mori

    Biometrics   59 ( 3 )   512 - 520   2003年9月

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    掲載種別:研究論文(学術雑誌)  

    In conventional line transect theory, it is assumed that all animals on the line are detected. This article introduces an extended and generalized hazard probability model without the need for such an assumption. The proposed method needs a survey design with independent observers having the same visual region and assumes an explicit distinction of simultaneous and delayed duplicates. It can take account of random heterogeneity caused by surfacing behavior as well as systematic heterogeneity by covariate effects. Furthermore, it can be easily extended to cases in which data from incompletely independent observers are available. The abundance estimate is based on the Horvitz-Thompson estimator in unequal detectability sampling scheme. Simulation studies suggest that the proposed method has good performance. The method is applied to a real data set on Antarctic minke whales in the illustration.

    DOI: 10.1111/1541-0420.00061

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  • Observer experience and minke whale sighting ability in IWC/IDCR-SOWER surveys 査読

    MORI M.

    J. Cetacean Res. Manage.   5   1 - 11   2003年

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  • Swimming behaviour and migration of a swordfish recorded by an archival tag 査読

    Mio Takahashi, Hiroshi Okamura, Kotaro Yokawa, Makoto Okazaki

    Marine and Freshwater Research   54 ( 4 )   527 - 534   2003年

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    掲載種別:研究論文(国際会議プロシーディングス)  

    An archival tag equipped with sensors for temperature, depth and luminous intensity is an excellent method to elucidate behaviour and migration of marine organisms. Herein, what we believe is the first successful archival tag experiment with swordfish in the world is reported. The swordfish, which was harpooned with an archival tag encased in a plastic capsule, was released in July 1999 off the east coast of Japan. The fish was recaptured by a harpoon fishing vessel in June 2000, only 103 km from the tagging location and weighed approximately 120-kg. By comparing the water temperature data of the archival tag with oceanographic data, a cyclic seasonal migration between the food-rich Oyashio cold current area (40-45°N) during summer and the subtropical wintering area (10-20°N) was suggested. During most of the days of observation and for the majority of the time within a day, tagged fish swam in cold water (3-6°C) and deeper than approximately 200 m; at night, fish generally stayed near the warmer surface waters (21-27°C). The greatest swimming depth was approximated to be 900 m, deduced from ambient water temperature data. The swimming depth and behaviour pattern changed in response to the ambient water temperature.

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  • Fisheries management based on ecosystem models - A case study using Ecopath and Ecosim 査読

    Hiroshi Okamura, Akihiko Yatsu, Kazuhiko Hiramatsu

    FISHERIES SCIENCE   68   154 - 157   2002年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER TOKYO  

    The Ecopath model for the western North Pacific was constructed and some preliminary analyses were carried out in order to examine the usefulness of the model for multi-species management Our Ecopath model consisted of 30 species groups based on the information that is mainly collected from published literature. Some Ecosim simulations showed non-trivial interaction between cetaceans and fishes and relative biomass of some cetaceans and fishes changed dramatically when their present harvest rates were changed in future. Fitting our model to the available abundance indices of some fishes indicated that the vulnerability parameter in the model was likely to be high. Further, additional simple simulation suggested that we could achieve targeted biomass of mackerel by adjusting the future harvest rate of cetaceans in place of that of mackerel. This indicates that multi-species management in the western North Pacific area might bring efficient fishing strategy. However, the results were very sensitive to setting of the vulnerability parameter. Therefore, Ecopath and Ecosim should not be considered as tools for multi-species management until uncertainty of important parameters is properly incorporated into Ecopath/Ecosim and the difference between them and a single-species model becomes dear. Nevertheless, those results from ecosystem models such as Ecopath and Ecosim are suggestive and valuable when they are brought up along with the result of single-species assessment.

    DOI: 10.2331/fishsci.68.sup1_154

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  • Spatial and temporal structure of the western North Pacific minke whale distribution inferred from JARPN sightings data. 査読

    Okamura, H, Matsuoka, K, Hakamada, T, Okazaki, M, Miyashita, T

    Journal of Cetacean Research and Management   3 ( 2 )   193 - 200   2001年

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  • Quantitative Analysis of Paired Comparison Data Using the Bradley-Terry Model with a Normal Distribution 査読

    Okamura Hiroshi, Kiyota Masashi, Hiramatsu Kazuhiko

    計量生物学   21 ( 2 )   2_1 - 14   2000年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:日本計量生物学会  

    The analysis of paired comparison experiments with frequency data such as win-loss records is usually dealt with using the Bradley-Terry model, wherein the number of wins is supposed to have a binomial distribution. This assumption of probability distribution is inappropriate and inconvenient in quantitative analysis with continuous variables such as preference tests of consumers in biology. In this paper, a practical method is proposed to apply the Bradley-Terry model to the repeated pair-comparison experiments with quantitative data. It is obtained by the nonlinear least squares method under the assumption of the additive normal error structure. Some simple methods for the estimation of precision and for the hypothesis testing are also given. An application to the food preference test of a captive northern fur seal suggests the validity and advantage of the method.

    DOI: 10.5691/jjb.21.2_1

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  • Parasites as biological tags of stocks of neon flying squid (Ommastrephes bartramii) in the North Pacific Ocean 査読

    NAGASAWA K

    Contributed Papers to International Symposium on Large Pelagic Squids, Tokyo, 1998   49 - 64   1998年

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    出版者・発行元:Japan Marine Fishery Resources Research Center  

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  • Rで学ぶ個体群生態学と統計モデリング

    岡村 寛( 担当: 単著)

    共立出版  2025年4月  ( ISBN:4320058453

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    総ページ数:368  

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  • 乱獲 : 漁業資源の今とこれから

    Hilborn, Ray, Hilborn, Ulrike, 市野川, 桃子, 岡村, 寛

    東海大学出版部  2015年12月  ( ISBN:9784486020806

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    総ページ数:xvii, 154p   記述言語:日本語  

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  • 海産哺乳類の調査と評価

    Garner, G. W., 白木原, 国雄, 岡村, 寛, 笠松, 不二男

    日本鯨類研究所  2002年9月 

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    総ページ数:169p   記述言語:日本語  

    CiNii Books

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MISC

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受賞

  • 日本水産学会水産学進歩賞

    2017年  

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  • 第6回日本計量生物学会奨励賞

    2009年  

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  • 第5回若手農林水産研究者表彰

    2009年  

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共同研究・競争的資金等の研究課題

  • 統計的機械学習による環境変動が海洋生物の時空間分布に与える影響の解明

    研究課題/領域番号:19K06216  2019年4月 - 2022年3月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    岡村 寛, 黒田 寛, 森田 晶子

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    配分額:4290000円 ( 直接経費:3300000円 、 間接経費:990000円 )

    ランダム効果によって時空間モデル分析を行うモデルvector autoregressive spatio-temporal (VAST) modelを利用して,我が国の重要水産資源であるホッケやゴマサバなどの時空間分布解析を行った.ホッケの調査データに対して,VASTモデルによる0歳魚および成魚の分布密度の時空間プロットを作成した結果,ホッケ道北系群の0歳魚は主産卵場の利尻島を含む日本海側北部を中心に分布していること,および分布密度が顕著に変化していたことが示された.また,漁業データを利用したホッケの時空間分析も行い,漁業データと調査データの結果はよく似ていることが分かった.漁業データを使った密度情報を資源評価に取り入れたところ,資源評価の精度が向上することが確認された.ゴマサバ太平洋系群の産卵量分布をVASTでモデル化し,マサバ産卵量と対応させることにより,種の判別誤差を考慮した密度の時空間変化を明らかにした.従来,マサバとゴマサバの産卵量の判別の精度に対して問題があり,それが故に,資源評価にバイアスがあることが疑われていたが,VASTによる指標値は,従来の指標値より優れており,資源評価のバイアスの軽減につながることが確認された.東京湾の主要な魚種の単位努力量あたり漁獲量を分析し,海洋環境と密度分布の変化をBoostingという機械学習手法で予測するモデルを構築した結果,一般化線形モデルのような従来法よりも良い精度で予測できることが分かった.機械学習を用いて,伊勢・三河湾のカタクチイワシ漁獲量の時空間的分布の推定を行った.

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  • 管理戦略評価法による次世代水産資源管理ルールの構築

    研究課題/領域番号:26520313  2014年7月 - 2020年3月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    市野川 桃子, 由上 龍嗣, 黒田 啓行, 岡村 寛

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    配分額:4940000円 ( 直接経費:3800000円 、 間接経費:1140000円 )

    持続可能な開発目標(SDGs)では、持続性を確保しながら水産物を最大限利用できるための水準に水産資源を維持することが水産資源の管理目標として掲げられている。この目標は、最大持続生産量(Maximum Sustainable Yield)と呼ばれる。しかし、個々の水産資源においてMSY水準を推定することは難しく、日本の水産資源管理においてはMSYを用いた管理が明示的には行われてこなかった。本研究では、日本の主要な水産資源でMSY水準を推定するための方法を提案し、これらを推定した。さらに、推定されたMSY水準を目標として持続的な管理をおこなうための頑健な管理方策を、シミュレーションによりもとめた。

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  • マイワシも大潮に産卵する? 小型浮魚類の月齢周期産卵の実証と資源調査への応用

    研究課題/領域番号:26450275  2014年4月 - 2017年3月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    大関 芳沖, 高須賀 明典, 岡村 寛

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    配分額:4940000円 ( 直接経費:3800000円 、 間接経費:1140000円 )

    過去の産卵調査データに月齢データ等を付加し、産卵日・孵化日月齢データセットを整備した。サンマについては、採集網数に対するデータの基準化を行い解析した結果、月齢別産卵尾数・孵化尾数の月齢周期性が周期性モデル解析により確認され、月が満ちている時期の産卵が多い傾向と月が暗い時期に孵化する傾向が認められた。
    産卵が長期間かつ広範囲にわたって認められるマイワシ等の魚種について、月齢と産卵の関係を探索した結果、いずれの魚種についても月齢と産卵の有意な関係は見出せなかった。
    以上の結果から、小型浮魚類の月齢同期性産卵現象は種によって認められるものがあるものの、痕跡的であることが分かった。

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  • 海洋生態学と機械学習法の融合によるデータ不足下の生態系評価手法の開発

    2012年4月 - 2017年3月

    JST  CREST 

    岡村 寛, 江口真透

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  • 野生生物の鉛直移動データのモデリング

    研究課題/領域番号:24654031  2012年4月 - 2015年3月

    日本学術振興会  科学研究費助成事業 挑戦的萌芽研究  挑戦的萌芽研究

    岡村 寛, 南川 真吾, 仙波 靖子

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    配分額:2340000円 ( 直接経費:1800000円 、 間接経費:540000円 )

    野生生物の鉛直移動データを取り扱うために,状態空間モデルと混合モデルを融合した新しいアプローチを開発した.シミュレーションデータを使って方法の有効性を調べたところ,パラメータ推定の精度は良かった.実データでは,個体差が大きく,集団全体での鉛直移動にどのような要因が効いているかを把握するまでには至らなかった.

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  • 高次捕食者情報を利用したCPUE解析の高度化と生態系変動履歴の復元

    研究課題/領域番号:21580241  2009年 - 2011年

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    清田 雅史, 岡村 寛, 米崎 史郎, 南 浩史

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    配分額:5070000円 ( 直接経費:3900000円 、 間接経費:1170000円 )

    1952-2006年の東北沖漁業データを電子化し解析した結果、サバ、マイワシなど卓越魚種の交替に応じて総漁獲量と漁獲物多様性が逆パターンの経年変化を示したが、環境保護派がフィッシングダウンとして指摘する漁獲物栄養段階の顕著な低下は認められなかった。キタオットセイの胃内容データと生殖腺組織安定同位体の分析から、1980年代のマイワシ卓越期には高次捕食者の食物組成と栄養段階が変化し、食物網全体に構造変化が生じたことが推察された。

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  • 目視調査による鯨類の個体数推定法の高精度化

    研究課題/領域番号:19780156  2007年 - 2008年

    日本学術振興会  科学研究費助成事業 若手研究(B)  若手研究(B)

    岡村 寛

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    配分額:1150000円 ( 直接経費:1000000円 、 間接経費:150000円 )

    本研究では,最新の統計技法を使用して,南氷洋ミンククジラの個体数をより精度良く推定する方法を開発した.開発したモデルをIWCから提供を受けた南氷洋ミンククジラの実際の目視データに当てはめることにより,偏りの小さい南氷洋の個体数推定値を得た.その結果,従来の方法で知られているよりも,個体数の変動は小さいことが明らかになった.

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担当経験のある科目(授業)

  • 統計学応用

    2024年4月 - 現在

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  • 統計学基礎

    2024年4月 - 現在

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  • 統計学特論(大学院修士課程)

    2024年4月

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  • 生物統計学

    2021年4月 - 2021年9月 機関名:日本大学

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