Updated on 2025/10/18

写真a

 
Hiroshi Okamura
 
Organization
Graduate School of Data Science Department of Data Science Professor
School of Data Science Department of Data Science
Title
Professor
External link

Research Interests

  • 海洋保全

  • 生物統計学

  • 海洋生態

  • 海洋資源

  • データサイエンス

  • 目視

  • 数理モデル

  • 水産資源学

Research Areas

  • Life Science / Aquatic bioproduction science

Research History

  • Yokohama City University   School of Data Science   Professor   Doctor of Agriculture

    2024.4

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    Country:Japan

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  • 日本大学生物資源科学部   非常勤講師

    2021.4 - 2021.9

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  • 国立研究開発法人 水産研究・教育機構 水産資源研究所   漁業情報解析部   主幹研究員

    2020.7 - 2024.3

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  • Fisheries Research and Education Agency

    2012.4 - 2020.7

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  • 独立行政法人 水産総合研究センター 国際水産資源研究所   外洋資源部   主任研究員

    2006.4 - 2012.3

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  • 独立行政法人 水産総合研究センター 遠洋水産研究所   外洋資源部   研究員

    2001.4 - 2006.3

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  • 水産庁 遠洋水産研究所   外洋資源部   研究員

    1995.4 - 2001.3

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Papers

  • Forecasting fish recruitment using machine learning methods: A case study of arabesque greenling Reviewed

    Hiroshi Okamura, Shoko Morita, Hiroshi Kuroda

    Fisheries Research   278   107096 - 107096   2024.7

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    Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.fishres.2024.107096

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  • Hierarchical modelling approach to estimate the abundance of data-limited cetacean species and its application to fishery-targeted and rarely seen delphinid species off Japan

    Y Kanaji, H Sasaki, T Hakamada, H Okamura

    ICES Journal of Marine Science   80 ( 6 )   1643 - 1657   2023.6

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    Publishing type:Research paper (scientific journal)   Publisher:Oxford University Press (OUP)  

    Abstract

    An assessment of the abundances and their trends is urgently needed for the conservation and management of fishery-targeted and rarely seen cetacean species (FTCS and RSCS, respectively); however, such assessment is often challenging because of the paucity of available data. In particular, the number of sightings is smaller than the general requirement for the reliable estimation of a detection function, and the spatial coverage of many cetacean surveys is insufficient. To address these issues, we propose a Bayesian approach that uses the previous abundance estimation of the same species or a species with similar biological traits as prior information. Therefore, we obtained the latest abundance estimates for six FTCS and two RSCS. For FTCS, we also estimated abundance trends by fitting an exponential population dynamics model with random effects accounting for interannual changes in animal distributions to the posterior samples of the Bayesian abundance estimates. Our approach enables us to (1) facilitate stakeholders’ consensus by maintaining previously agreed abundances while updating the conservation information; (2) identify the species of greater concern and prioritize conservation efforts towards those species; and (3) monitor the abundance and trends of data-limited cetacean species.

    DOI: 10.1093/icesjms/fsad091

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  • Which fisheries and biological factors affect the misclassification of stock status determined by data-limited methods? Reviewed

    Mitsuyo Miyagawa, Hiroshi Okamura, Momoko Ichinokawa

    Fisheries Research   257   106491 - 106491   2023.1

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    Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.fishres.2022.106491

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  • Towards sustainable use of fishery resources: maximum sustainable yield and biometrics Invited Reviewed

    Okamura Hiroshi

    Japanese Journal of Biometrics   43 ( 2 )   189 - 230   2023

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    Authorship:Lead author, Last author, Corresponding author   Language:Japanese   Publisher:The Biometric Society of Japan  

    Fisheries science is one of the disciplines of studying marine and riverine organisms, but it is different from usual biology in that it focuses on how to utilize organisms sustainably as renewable resources. In terms of sustainable use of fishery resources, it is important to make necessary decisions as soon as possible. However, large uncertainty involved with the fisheries data usually leads to inconclusive argument, resulting in inadequate decision making and the risk of collapsing the resource without doing possible measures. In the latter half of the 20th century, an emphasis on fisheries management science moved away from optimality to robustness. In order to achieve robustness against various uncertainties, biometric statistical methods utilizing the power of modern high-speed computers were actively incorporated into the assessment and risk management of fishery resources. This paper introduces how biometric statistical methods have been applied in recent years in fisheries science, especially in the context of recent development of the MSY-based fisheries management in Japan.

    DOI: 10.5691/jjb.43.189

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  • Fish environmental DNA in Tokyo Bay: A feasibility study on the availability of environmental DNA for fisheries Reviewed

    Yuki Hongo, Shota Nishijima, Yuki Kanamori, Shuhei Sawayama, Kazuki Yokouchi, Natsuki Kanda, Shiori Oori, Yasuyuki Uto, Mitsuhiro Ishii, Hisanori Mita, Seiji Akimoto, Akane Kusano, Kyu Okabe, Tetsuya Yamazaki, Nobuto Fukuda, Toshihiro Onitsuka, Masayuki Minagawa, Hiroshi Okamura, Kentaro Niwa, Satoshi Nagai, Shigenori Suzuki, Michio Yoneda, Toshihiro Yamamoto, Hiroaki Kurogi

    Regional Studies in Marine Science   47   2021.9

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.rsma.2021.101950

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  • Novel robust time series analysis for long-term and short-term prediction Reviewed International journal

    Hiroshi Okamura, Yutaka Osada, Shota Nishijima, Shinto Eguchi

    Scientific Reports   11 ( 1 )   11938 - 11938   2021.6

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    DOI: 10.1038/s41598-021-91327-8

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  • Spatio-temporal model reduces species misidentification bias of spawning eggs in stock assessment of spotted mackerel in the western North Pacific Reviewed

    Yuki Kanamori, Shota Nishijima, Hiroshi Okamura, Ryuji Yukami, Mikio Watai, Akinori Takasuka

    Fisheries Research   236   2021.4

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.fishres.2020.105825

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  • Clarifying the effects of environmental factors and fishing on abundance variability of Pacific saury (Cololabis saira) in the western North Pacific Ocean during 1982–2018 Reviewed

    Akihiko Yatsu, Hiroshi Okamura, Taro Ichii, Kazuyoshi Watanabe

    Fisheries Oceanography   30 ( 2 )   194 - 204   2021.3

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/fog.12513

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  • State-space modeling clarifies productivity regime shifts of Japanese flying squid Reviewed

    Shota Nishijima, Hiroshi Kubota, Toshiki Kaga, Suguru Okamoto, Hisae Miyahara, Hiroshi Okamura

    Population Ecology   63 ( 1 )   27 - 40   2021.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/1438-390X.12062

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  • Estimating the maximum sustainable yield of snow crab (Chionoecetes opilio) off Tohoku, Japan via a state-space stock assessment model with time-varying natural mortality Reviewed

    Yasutoki Shibata, Jiro Nagao, Yoji Narimatsu, Eisuke Morikawa, Yuto Suzuki, Shun Tokioka, Manabu Yamada, Shigeho Kakehi, Hiroshi Okamura

    Population Ecology   63 ( 1 )   41 - 60   2021.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/1438-390X.12068

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  • Multiple-model stock assessment frameworks for precautionary management and conservation on fishery-targeted coastal dolphin populations off Japan Reviewed

    Yu Kanaji, Hikari Maeda, Hiroshi Okamura, André E. Punt, Trevor Branch

    Journal of Applied Ecology   58 ( 11 )   2479 - 2492   2021

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/1365-2664.13982

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  • Review of the assessment of two stocks of Antarctic minke whales (eastern Indian Ocean and western South Pacific) conducted by the Scientific Committee of the International Whaling Commission. Reviewed

    Murase, H, Palka, D, Punt, A.E, Pastene, L.A, Kitakado, T, Matsuoka, K, Hakamada, T, Okamura, H, Bando, T, Tamura, T, Konishi, K, Yasunaga, G, Isoda, T, Kato, H

    Journal of Cetacean Research and Management   21   95 - 122   2020

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  • Spatiotemporal dynamics of the Pacific chub mackerel revealed by standardized abundance indices Reviewed

    Midori Hashimoto, Shota Nishijima, Ryuji Yukami, Chikako Watanabe, Yasuhiro Kamimura, Sho Furuichi, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Research   219   2019.11

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.fishres.2019.105315

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  • Climate change shifts the spawning ground northward and extends the spawning period of chub mackerel in the western North Pacific Reviewed

    Yuki Kanamori, Akinori Takasuka, Shota Nishijima, Hiroshi Okamura

    Marine Ecology Progress Series   624   155 - 166   2019.8

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    DOI: 10.3354/meps13037

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  • Synchronous multi-species alternations between the northern Humboldt and Kuroshio Current systems Reviewed

    Yoshioki Oozeki, Miguel Ñiquen Carranza, Akinori Takasuka, Patricia Ayón Dejo, Hiroshi Kuroda, Jorge Tam Malagas, Takeshi Okunishi, Luis Vásquez Espinoza, Dimitri Gutiérrez Aguilar, Hiroshi Okamura, Renato Guevara Carrasco

    Deep-Sea Research Part II: Topical Studies in Oceanography   159   11 - 21   2019.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.dsr2.2018.11.018

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  • Integrated multi-timescale modeling untangles anthropogenic, environmental, and biological effects on catchability Reviewed

    Shota Nishijima, Shigenori Suzuki, Momoko Ichinokawa, Hiroshi Okamura

    Canadian Journal of Fisheries and Aquatic Sciences   76 ( 11 )   2045 - 2056   2019

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1139/cjfas-2018-0114

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  • Comparison of the performance of age-structured models with few survey indices Reviewed

    Hiroshi Okamura, Yuuho Yamashita, Momoko Ichinokawa, Shota Nishijima

    ICES Journal of Marine Science   75 ( 6 )   2016 - 2024   2018.12

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    DOI: 10.1093/icesjms/fsy126

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  • Oceanographic factors affecting interannual recruitment variability of Pacific saury (Cololabis saira) in the central and western North Pacific Reviewed

    Taro Ichii, Haruka Nishikawa, Kedarnath Mahapatra, Hiroshi Okamura, Hiromichi Igarashi, Mitsuo Sakai, Satoshi Suyama, Masayasu Nakagami, Miyako Naya, Norihisa Usui, Yoshihiro Okada

    Fisheries Oceanography   27 ( 5 )   445 - 457   2018.9

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    DOI: 10.1111/fog.12265

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  • Climate change and interspecific interactions drive species alternations between anchovy and sardine in the western North Pacific: Detection of causality by convergent cross mapping Reviewed

    Shin Ichiro Nakayama, Akinori Takasuka, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Oceanography   27 ( 4 )   312 - 322   2018.7

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/fog.12254

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  • Impacts of the nonlinear relationship between abundance and its index in a tuned virtual population analysis Reviewed

    Midori Hashimoto, Hiroshi Okamura, Momoko Ichinokawa, Kazuhiko Hiramatsu, Takashi Yamakawa

    Fisheries Science   84 ( 2 )   335 - 347   2018.3

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    DOI: 10.1007/s12562-017-1159-0

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  • Properly designed effort management for highly fluctuating small pelagic fish populations: A case study in a purse seine fishery targeting chub mackerel Reviewed

    Momoko Ichinokawa, Hiroshi Okamura

    Marine Ecology Progress Series   2018   265 - 276   2018

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    DOI: 10.3354/meps12688

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  • Target-based catch-per-unit-effort standardization in multispecies fisheries Reviewed

    Hiroshi Okamura, Shoko H. Morita, Tetsuichiro Funamoto, Momoko Ichinokawa, Shinto Eguchi

    Canadian Journal of Fisheries and Aquatic Sciences   75 ( 3 )   452 - 463   2018

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    DOI: 10.1139/cjfas-2016-0460

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  • Ridge virtual population analysis to reduce the instability of fishing mortalities in the terminal year Reviewed

    Hiroshi Okamura, Yuuho Yamashita, Momoko Ichinokawa

    ICES Journal of Marine Science   74 ( 9 )   2427 - 2436   2017.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1093/icesjms/fsx089

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  • Robust bias correction model for estimation of global trend in marine populations Reviewed

    Osamu Komori, Shinto Eguchi, Yusuke Saigusa, Hiroshi Okamura, Momoko Ichinokawa

    Ecosphere   8 ( 12 )   2017.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/ecs2.2038

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  • The status of Japanese fisheries relative to fisheries around the world Reviewed

    Momoko Ichinokawa, Hiroshi Okamura, Hiroyuki Kurota

    ICES Journal of Marine Science   74 ( 5 )   1277 - 1287   2017.5

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  • Incorporating accessibility limitation into the surplus production model Reviewed

    Shin Ichiro Nakayama, Seiji Akimoto, Momoko Ichinokawa, Hiroshi Okamura

    Fisheries Science   83 ( 3 )   353 - 365   2017.5

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    DOI: 10.1007/s12562-017-1078-0

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  • Impacts of extensive driftnet fishery and late 1990s climate regime shift on dominant epipelagic nekton in the Transition Region and Subtropical Frontal Zone: Implications for fishery management Reviewed

    T. Ichii, H. Nishikawa, H. Igarashi, H. Okamura, K. Mahapatra, M. Sakai, T. Wakabayashi, D. Inagake, Y. Okada

    Progress in Oceanography   150   35 - 47   2017.1

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    DOI: 10.1016/j.pocean.2015.03.007

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  • Risk assessment of radioisotope contamination for aquatic living resources in and around Japan Reviewed

    Hiroshi Okamura, Shiro Ikeda, Takami Morita, Shinto Eguchi

    Proceedings of the National Academy of Sciences of the United States of America   113 ( 14 )   3838 - 3843   2016.4

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    DOI: 10.1073/pnas.1519792113

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  • An asymmetric logistic regression model for ecological data Reviewed

    Osamu Komori, Shinto Eguchi, Shiro Ikeda, Hiroshi Okamura, Momoko Ichinokawa, Shinichiro Nakayama

    Methods in Ecology and Evolution   7 ( 2 )   249 - 260   2016.2

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/2041-210X.12473

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  • The effects of the GPS-fix interval when analyzing the behavior of terrestrial mammals using a switching state-space model Reviewed

    Arimoto Isao, Koike Shinsuke, Okamura Hiroshi, Yamazaki Koji, Kaji Koichi

    Honyurui Kagaku (Mammalian Science)   56 ( 1 )   5 - 16   2016

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    Language:Japanese   Publisher:The Mammal Society of Japan  

    Behavioral classification and observational error correction methods are often needed when analyzing mammal behavior using GPS. The switching state-space model (SSSM) has been proposed for this problem. However, various positioning intervals have been used to attempt to balance the research purposes and battery life of the GPS. Thus, we may come to different conclusions regarding the appropriate positioning intervals using the same analysis. In this study, we used Asiatic black bear (<i>Ursus thibetanus</i>) behavior data. We generated various time interval positioning data from the real positioning data, to verify the effect of the interval on the SSSM estimates. By combining the SSSM with activity sensors, we can classify the behavior into transiting, resting, and foraging, using 5- to 120-minute intervals. Moreover, time-spatial scales (which recognize the core area) increased as the positioning interval increased. We compared the relative moving distances for the different positioning intervals. Our analysis of the habitat selection performed better using short positioning intervals of 30 minutes or less. We expect that new knowledge will be obtained by applying SSSM with short interval positioning data (e.g., at 5- to 30-minute intervals).

    DOI: 10.11238/mammalianscience.56.5

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  • Effective time closures: Quantifying the conservation benefits of input control for the Pacific chub mackerel fishery Reviewed

    Momoko Ichinokawa, Hiroshi Okamura, Chikako Watanabe, Atsushi Kawabata, Yoshioki Oozeki

    Ecological Applications   25 ( 6 )   1566 - 1584   2015.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1890/14-1216.1

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  • Long-term ecosystem change in the western North Pacific inferred from commercial fisheries and top predator diet Reviewed

    Shiroh Yonezaki, Masashi Kiyota, Hiroshi Okamura

    Deep-Sea Research Part II: Topical Studies in Oceanography   113   91 - 101   2015.3

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.dsr2.2014.10.027

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  • An introduction to convergent cross mapping : a novel method for causality detection in ecological time series Reviewed

    Nakayama Shin-Ichiro, Abe Masato S., Okamura Hiroshi

    JAPANESE JOURNAL OF ECOLOGY   65 ( 3 )   241 - 253   2015

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    Language:Japanese   Publisher:The Ecological Society of Japan  

    DOI: 10.18960/seitai.65.3_241

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    Other Link: https://agriknowledge.affrc.go.jp/RN/2010901124

  • Searching for optimum management procedures by quantifying management objectives for Japanese domestic fishery stocks without stock biomass estimation Reviewed

    ICHINOKAWA MOMOKO, OKAMURA HIROSHI, KUROTA HIROYUKI, YUKAMI RYUJI, TANAKA HIROSHIGE, SHIBATA YASUTOKI, OHSHIMO SEIJI

    NIPPON SUISAN GAKKAISHI   81 ( 2 )   206 - 218   2015

  • Spatiotemporal catch distribution of age-0 Pacific bluefin tuna Thunnus orientalis caught by the Japanese troll fishery in relation to surface sea temperature and seasonal migration Reviewed

    Momoko Ichinokawa, Hiroshi Okamura, Kazuhiro Oshima, Kotaro Yokawa, Yukio Takeuchi

    Fisheries Science   80 ( 6 )   1181 - 1191   2014.11

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    DOI: 10.1007/s12562-014-0806-y

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  • Data conflict caused by model mis-specification of selectivity in an integrated stock assessment model and its potential effects on stock status estimation Reviewed

    Momoko Ichinokawa, Hiroshi Okamura, Yukio Takeuchi

    Fisheries Research   158   147 - 157   2014.10

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    DOI: 10.1016/j.fishres.2014.02.003

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  • Evaluation of the sensitivity of biological reference points to the spatio-temporal distribution of fishing effort when seasonal migrations are sex-specific Reviewed

    Hiroshi Okamura, Murdoch K. McAllister, Momoko Ichinokawa, Lynne Yamanaka, Kendra Holt

    Fisheries Research   158   116 - 123   2014.10

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    DOI: 10.1016/j.fishres.2013.10.022

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  • Review of stock evaluation methods using VPA for fishery stocks in Japan : implementation with R Reviewed

    78 ( 2 )   104 - 113   2014.5

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  • Behavior and habitat of Asiatic black bear (<i>Ursus thibetanus</i>) inhabiting near settlements Reviewed

    Arimoto Isao, Okamura Hiroshi, Koike Shinsuke, Yamazaki Koji, Kaji Koichi

    Honyurui Kagaku (Mammalian Science)   54 ( 1 )   19 - 31   2014

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    Language:Japanese   Publisher:The Mammal Society of Japan  

    Recently, conflicts between Asiatic black bears (<i>Ursus thibetanus</i>) and humans are increasing as bears expand their distribution. However, little is known about the biology of bears inhabiting near settlements. We fitted GPS collars on 7 bears during 2010–11, and by fitting the Switching State-Space Model, we smoothed error-prone GPS tracks and categorized bear behavior into transit, active stay, and inactive stay. Additionally, we investigated habitat characteristics by exploring active-stay core areas. On the whole, bears lived near settlements in summer and more distantly from settlements in autumn. However, there were exceptional bears staying more distantly in summer and near settlements in autumn. Near settlements, bears mainly foraged <i>Juglans mandshurica</i> and <i>Castanea crenata</i> in late summer and <i>Diospyros kaki</i> in autumn. In distant areas, bears foraged ants and <i>Prunus</i> spp. in late summer and <i>Quercus mongolica</i> in autumn. Bears' nocturnal activity became higher near settlements. Our results indicated that bears come close to settlements in particular seasons according to seasonal changes in food availability. Bears were more likely to be near settlements if there were intensively distributed foods derived from humans nearby.

    DOI: 10.11238/mammalianscience.54.19

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  • Measurement of diet preference and its variability in captive northern fur seals (Callorhinus ursinus) Reviewed

    Masashi Kiyota, Hiroshi Okamura, Hiroya Itou, Noriyasu Suzuki, Kaoru Kohyama

    MAMMAL STUDY   38 ( 3 )   199 - 210   2013.9

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    DOI: 10.3106/041.038.0308

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  • Abundance Estimation of Long-Diving Animals Using Line Transect Methods (vol 68, pg 504, 2012) Reviewed

    Hiroshi Okamura, Shingo Minamikawa, Hans J. Skaug, Toshiya Kishiro

    BIOMETRICS   69 ( 2 )   555 - 555   2013.6

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  • Marginal increment analysis: A new statistical approach of testing for temporal periodicity in fish age verification Reviewed

    H. Okamura, A. E. Punt, Y. Semba, M. Ichinokawa

    Journal of Fish Biology   82 ( 4 )   1239 - 1249   2013.4

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    DOI: 10.1111/jfb.12062

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  • Locality difference in the frequency of asymmetric shell marking type of the Manila clam Ruditapes philippinarum Reviewed

    CHOW SEINEN, YAMAMOTO TOSHIHIRO, WATANABE KAZUTOSHI, FUJINAMI YUICHIRO, KANEMATSU MASAEI, HASEGAWA NATSUKI, OKAMURA HIROSHI, MIZUTA KOJI, MIYAWAKI DAI, HADA YASUFUMI, SAKURAI IZUMI, IKUSHIMA NOBORU, KITADA SHUICHI, TANIMOTO NAOFUMI, HANYU KAZUHIRO, KOBAYASHI YUTAKA, TOBA MITSUHARU

    NIPPON SUISAN GAKKAISHI   79 ( 2 )   190 - 197   2013.3

  • A generalized model for overdispersed count data Reviewed

    Hiroshi Okamura, André E. Punt, Tatsuya Amano

    Population Ecology   54 ( 3 )   467 - 474   2012.7

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    DOI: 10.1007/s10144-012-0319-4

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  • Erratum: Changes in abundance of the neon flying squid Ommastrephes bartramii in relation to climate change in the central North Pacific Ocean (Marine Ecology Progress Series (2011) 441 (151-164))

    Taro Ichii, Kedarnath Mahapatra, Mitsuo Sakai, Toshie Wakabayashi, Hiroshi Okamura, Hiromichi Igarashi, Denzo Inagake, Yoshihiro Okada

    Marine Ecology Progress Series   457   302   2012.6

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  • Abundance Estimation of Long-Diving Animals Using Line Transect Methods Reviewed

    Hiroshi Okamura, Shingo Minamikawa, Hans J. Skaug, Toshiya Kishiro

    Biometrics   68 ( 2 )   504 - 513   2012.6

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1111/j.1541-0420.2011.01689.x

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  • Hierarchical models for smoothed population indices: The importance of considering variations in trends of count data among sites Reviewed

    Tatsuya Amano, Hiroshi Okamura, Savrina F. Carrizo, William J. Sutherland

    Ecological Indicators   13 ( 1 )   243 - 252   2012.2

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    DOI: 10.1016/j.ecolind.2011.06.008

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  • A bootstrap method for testing equality of peak months Reviewed

    Hiroshi Okamura, Akinori Takasuka

    Population Ecology   54 ( 1 )   169 - 176   2012.1

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    DOI: 10.1007/s10144-011-0280-7

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  • A note on the von Bertalanffy growth function concerning the allocation of surplus energy to reproduction Reviewed

    Shuhei Ohnishi, Takashi Yamakawa, Hiroshi Okamura, Tatsuro Akamine

    Fishery Bulletin   110 ( 2 )   223 - 229   2012

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  • A macro-scale perspective on within-farm management: How climate and topography alter the effect of farming practices Reviewed

    Tatsuya Amano, Yoshinobu Kusumoto, Hiroshi Okamura, Yuki G. Baba, Kenji Hamasaki, Koichi Tanaka, Shori Yamamoto

    Ecology Letters   14 ( 12 )   1263 - 1272   2011.12

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    DOI: 10.1111/j.1461-0248.2011.01699.x

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  • Changes in abundance of the neon flying squid Ommastrephes bartramii in relation to climate change in the central North Pacific Ocean Reviewed

    Taro Ichii, Kedarnath Mahapatra, Mitsuo Sakai, Toshie Wakabayashi, Hiroshi Okamura, Hiromichi Igarashi, Denzo Inagake, Yoshihiro Okada

    Marine Ecology Progress Series   441   151 - 164   2011.11

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    DOI: 10.3354/meps09365

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  • Long-term abundance trends of the northern form of the short-finned pilot whale (Globicephala macrorhynchus) along the Pacific coast of Japan Reviewed

    Yu Kanaji, Hiroshi Okamura, Tomio Miyashita

    Marine Mammal Science   27 ( 3 )   477 - 492   2011.7

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    DOI: 10.1111/j.1748-7692.2010.00410.x

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  • Similarity indices, ordination, and community analysis tests using the software R Reviewed

    Doi Hideyuki, Okamura Hiroshi

    JAPANESE JOURNAL OF ECOLOGY   61 ( 1 )   3 - 20   2011

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    Language:Japanese   Publisher:The Ecological Society of Japan  

    DOI: 10.18960/seitai.61.1_3

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    Other Link: https://agriknowledge.affrc.go.jp/RN/2010811727

  • Asymptotic bias of the hazard probability model under model mis-specification Reviewed

    Tore Selland Kleppe, Hans J. Skaug, Hiroshi Okamura

    Journal of Cetacean Research and Management   11 ( 3 )   249 - 252   2010.12

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  • Estimating gastric evacuation rate and daily ration of chub mackerel and spotted mackerel in the Kuroshio-Oyashio transition and Oyashio regions Reviewed

    NAKATSUKA Sayaka, KAWABATA Atsushi, TAKASUKA Akinori, KUBOTA Hiroshi, OKAMURA Hiroshi, OOZEKI Yoshioki

    Bulletin of the Japanese Society of Fisheries Oceanography   74 ( 2 )   105 - 117   2010.5

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  • Patchiness structure and mortality of pacific saury cololabis saira larvae in the northwestern pacific Reviewed

    Yoshioki Oozeki, Akinori Takasuka, Hiroshi Okamura, Hiroshi Kubota, Ryo Kimura

    Fisheries Oceanography   18 ( 5 )   328 - 345   2009.9

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    DOI: 10.1111/j.1365-2419.2009.00514.x

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  • A novel statistical method for validating the periodicity of vertebral growth band formation in elasmobranch fishes Reviewed

    Hiroshi Okamura, Yasuko Semba

    Canadian Journal of Fisheries and Aquatic Sciences   66 ( 5 )   771 - 780   2009.5

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    DOI: 10.1139/F09-039

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  • Effect of bait species and color on sea turtle bycatch and fish catch in a pelagic longline fishery Reviewed

    Kosuke Yokota, Masashi Kiyota, Hiroshi Okamura

    Fisheries Research   97 ( 1-2 )   53 - 58   2009.4

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    DOI: 10.1016/j.fishres.2009.01.003

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  • A resource selection model for analyzing pseudoreplicated data due to grouping behavior of animals Reviewed

    Hiroshi Okamura, Masashi Kiyota, Toshihide Kitakado

    Journal of Agricultural, Biological, and Environmental Statistics   13 ( 3 )   294 - 312   2008.9

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    DOI: 10.1198/108571108X337817

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    Other Link: https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-19780156/

  • Toward sustainable management of small cetacean fisheries around Japan Reviewed

    Hiroshi Okamura, Toshihide Iwasaki, Tomio Miyashita

    Fisheries Science   74 ( 4 )   718 - 729   2008.8

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    DOI: 10.1111/j.1444-2906.2008.01582.x

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  • Provisioning strategies of Antarctic fur seals and chinstrap penguins produce different responses to distribution of common prey and habitat Reviewed

    Taro Ichii, John L. Bengtson, Peter L. Boveng, Yoshimi Takao, John K. Jansen, Lisa M. Hiruki-Raring, Michael F. Cameron, Hiroshi Okamura, Tomonari Hayashi, Mikio Naganobu

    Marine Ecology Progress Series   344   277 - 297   2007.8

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    DOI: 10.3354/meps06873

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  • Prey selection of common minke (Balaenoptera acutorostrata) and Bryde's (Balaenoptera edeni) whales in the western North Pacific in 2000 and 2001 Reviewed

    Hiroto Murase, Tsutomu Tamura, Hiroshi Kiwada, Yoshihiro Fujise, Hikaru Watanabe, Hiroshi Ohizumi, Shiroh Yonezaki, Hiroshi Okamura, Shigeyuki Kawahara

    Fisheries Oceanography   16 ( 2 )   186 - 201   2007.3

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    DOI: 10.1111/j.1365-2419.2006.00426.x

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  • Effect of surfacing patterns on abundance estimates of long-diving animals Reviewed

    Hiroshi Okamura, Shingo Minamikawa, Toshihide Kitakado

    Fisheries Science   72 ( 3 )   631 - 638   2006.6

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    DOI: 10.1111/j.1444-2906.2006.01193.x

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  • Stock assessment of the autumn cohort of neon flying squid (Ommastrephes bartramii) in the North Pacific based on past large-scale high seas driftnet fishery data Reviewed

    Taro Ichii, Kedarnath Mahapatra, Hiroshi Okamura, Yoshihiro Okada

    Fisheries Research   78 ( 2-3 )   286 - 297   2006.5

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    DOI: 10.1016/j.fishres.2006.01.003

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  • Harassment, abduction, and mortality of pups by nonterritorial male northern fur seals Reviewed

    Masashi Kiyota, Hiroshi Okamura

    Journal of Mammalogy   86 ( 6 )   1227 - 1236   2005.12

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    Publishing type:Research paper (scientific journal)  

    DOI: 10.1644/04-MAMM-A-031R2.1

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  • A review of statistical analyses on resource selection-II : Introduction to several analysis techniques Reviewed

    KIYOTA Masashi, OKAMURA Hiroshi, YONEZAKI Shiroh, HIRAMATSU Kazuhiko

    Honyurui Kagaku (Mammalian Science)   45 ( 1 )   1 - 24   2005.6

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    Language:Japanese   Publisher:The Mammal Society of Japan  

    DOI: 10.11238/mammalianscience.45.1

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  • An improved method for line transect sampling in Antarctic minke whale surveys. Reviewed

    Okamura, H, Kitakado, T, Mori, M

    Journal of Cetacean Research and Management   7 ( 2 )   97 - 106   2005

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  • A review of statistical analyses on resource selection : I. Basic concepts and calculations Reviewed

    KIYOTA Masashi, OKAMURA Hiroshi, YONEZAKI Shiroh, HIRAMATSU Kazuhiko

    Honyurui Kagaku (Mammalian Science)   44 ( 2 )   129 - 146   2004.12

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    DOI: 10.11238/mammalianscience.44.129

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  • A line transect method to estimate abundance of long-diving animals Reviewed

    Hiroshi Okamura

    Fisheries Science   69 ( 6 )   1176 - 1181   2003.12

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    DOI: 10.1111/j.0919-9268.2003.00743.x

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  • Abundance estimation of diving animals by the double-platform line transect method Reviewed

    Hiroshi Okamura, Toshihide Kitakado, Kazuhiko Hiramatsu, Mitsuyo Mori

    Biometrics   59 ( 3 )   512 - 520   2003.9

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    DOI: 10.1111/1541-0420.00061

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  • Swimming behaviour and migration of a swordfish recorded by an archival tag Reviewed

    Mio Takahashi, Hiroshi Okamura, Kotaro Yokawa, Makoto Okazaki

    Marine and Freshwater Research   54 ( 4 )   527 - 534   2003

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    DOI: 10.1071/MF01245

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  • Observer experience and minke whale sighting ability in IWC/IDCR-SOWER surveys. Reviewed

    Mori, M, Butterworth, D. S, Brandao, A, Rademeyer, R. A, Okamura, H, Matsuda, H

    Journal of Cetacean Research and Management   5   1 - 11   2003

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  • Fisheries management based on ecosystem models - A case study using Ecopath and Ecosim Reviewed

    Hiroshi Okamura, Akihiko Yatsu, Kazuhiko Hiramatsu

    FISHERIES SCIENCE   68   154 - 157   2002

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    DOI: 10.2331/fishsci.68.sup1_154

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  • Spatial and temporal structure of the western North Pacific minke whale distribution inferred from JARPN sightings data. Reviewed

    Okamura, H, Matsuoka, K, Hakamada, T, Okazaki, M, Miyashita, T

    Journal of Cetacean Research and Management   3 ( 2 )   193 - 200   2001

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  • Quantitative Analysis of Paired Comparison Data Using the Bradley-Terry Model with a Normal Distribution Reviewed

    Hiroshi Okamura, Masashi Kiyota, Kazuhiko Hiramatsu

    Japanese Journal of Biometrics   21 ( 2 )   2_1 - 14   2000

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    The analysis of paired comparison experiments with frequency data such as win-loss records is usually dealt with using the Bradley-Terry model, wherein the number of wins is supposed to have a binomial distribution. This assumption of probability distribution is inappropriate and inconvenient in quantitative analysis with continuous variables such as preference tests of consumers in biology. In this paper, a practical method is proposed to apply the Bradley-Terry model to the repeated pair-comparison experiments with quantitative data. It is obtained by the nonlinear least squares method under the assumption of the additive normal error structure. Some simple methods for the estimation of precision and for the hypothesis testing are also given. An application to the food preference test of a captive northern fur seal suggests the validity and advantage of the method.

    DOI: 10.5691/jjb.21.2_1

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  • Parasites as biological tags of stocks of neon flying squid (Ommastrephes bartramii) in the North Pacific Ocean. Reviewed

    Nagasawa, K, Mori, J, Okamura, H

    Contributed papers to International Symposium on Large Pelagic Squids.   49 - 64   1998

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Books

  • Rで学ぶ個体群生態学と統計モデリング

    岡村 寛( Role: Sole author)

    共立出版  2025.4  ( ISBN:4320058453

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    Total pages:368  

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  • 乱獲 : 漁業資源の今とこれから

    Hilborn, Ray, Hilborn, Ulrike, 市野川, 桃子, 岡村, 寛

    東海大学出版部  2015.12  ( ISBN:9784486020806

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    Total pages:xvii, 154p   Language:Japanese  

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  • 海産哺乳類の調査と評価

    Garner, G. W., 白木原, 国雄, 岡村, 寛, 笠松, 不二男

    日本鯨類研究所  2002.9 

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    Total pages:169p   Language:Japanese  

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MISC

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Awards

  • 日本水産学会水産学進歩賞

    2017  

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  • 第6回日本計量生物学会奨励賞

    2009  

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  • 第5回若手農林水産研究者表彰

    2009  

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Research Projects

  • Model development to aim at integration of conservation ecology and fisheries science

    Grant number:23K11025  2023.4 - 2026.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

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    Grant amount:\2600000 ( Direct Cost: \2000000 、 Indirect Cost:\600000 )

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  • Elucidation of impacts of climate changes on spatio-temporal distributions of marine animals using machine learning approaches

    Grant number:19K06216  2019.4 - 2022.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

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    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

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  • Development of new generation's harvest control rule with management strategy evaluation

    Grant number:26520313  2014.7 - 2020.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Ichinokawa Momoko

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    Grant amount:\4940000 ( Direct Cost: \3800000 、 Indirect Cost:\1140000 )

    This study project presents the first quantitative review of the stock status relative to the stock biomass and the exploitation rate that achieved the maximum sustainable yield (MSY) for 37 Japanese stocks contributing 61% of the total marine capture production in Japan. Base on the findings, we constructed simulation frameworks that mimic characteristics of Japanese fisheries stocks and explored new-generation’s harvest control rules based on MSY reference points.

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  • Lunar spawning rhythms of small pelagic species - Verification and utilization for stock assessment survey

    Grant number:26450275  2014.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Oozeki Yoshioki

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    Grant amount:\4940000 ( Direct Cost: \3800000 、 Indirect Cost:\1140000 )

    Egg survey database with lunar age data was constructed on Japanese sardine, Japanese anchovy, chub mackerel and Pacific saury. Existence of lunar cycle was examined by the analyses of periodicity models on the spawning record of each species. In case of the Pacific saury, lunar cycle of spawning behavior was significantly observed, but it were not proved in other species.

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  • 海洋生態学と機械学習法の融合によるデータ不足下の生態系評価手法の開発

    2012.4 - 2017.3

    JST  CREST 

    岡村 寛, 江口真透

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  • Modelling vertical migration patterns of wild animals

    Grant number:24654031  2012.4 - 2015.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research  Grant-in-Aid for Challenging Exploratory Research

    OKAMURA HIROSHI, MINAMIKAWA Shingo, SEMBA Yasuko

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    Grant amount:\2340000 ( Direct Cost: \1800000 、 Indirect Cost:\540000 )

    We developed a new approach to deal with vertical migration of wild animals using a combination of state-space model and mixture model. This approach enables us to know what factor affects the migration pattern of wild animals. Simulation tests showed that the model could provide accurate estimation of parameters of interest. However, for the applied study using the real migration data, the general trend of migration patterns on whole population was vague due to great difference in individual migration patterns.

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  • Use of top predator information for developing fishery CPUE analysis and reconstructing historical changes in marine ecosystem

    Grant number:21580241  2009 - 2011

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    KIYOTA Masashi, OKAMURA Hiroshi, YONEZAKI Shiro, MINAMI Hiroshi

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    Grant amount:\5070000 ( Direct Cost: \3900000 、 Indirect Cost:\1170000 )

    We compiled an electric database on Japanese fisheries off Tohoku area for 1952-2006.Analysis of the data revealed historical changes in total catch and its diversity, which showed reversed patterns to each other related to the alternation of dominant fish species. Mean trophic level of the catch did not show drastic historical fall, contrary to the"Fishing down"hypothesis asserted by some environmentalists. Analyses of northern fur seal stomach content data and gonad tissue stable isotope ratios indicated long-term shifts in diet composition and trophic level of the top predator, and resultant changes in marine food web structure.

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  • Precise abundance estimation method by cetacean sighting surveys

    Grant number:19780156  2007 - 2008

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

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    Grant amount:\1150000 ( Direct Cost: \1000000 、 Indirect Cost:\150000 )

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Teaching Experience

  • 統計学基礎

    2024.4

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  • 統計学応用

    2024.4

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  • 統計学特論(大学院修士課程)

    2024.4

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  • 生物統計学

    2021.4 - 2021.9 Institution:日本大学

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