Updated on 2025/11/10

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写真a

 
Shinichi Tomizawa
 
Organization
Graduate School of Medicine Department of Medicine Histology and Cell Biology Lecturer
School of Medicine Medical Course
Title
Lecturer
Profile

Study of epigenome dynamics during germline and embryonic development.
Epigenetic regulation of stem cell differentiation.

External link

Degree

  • PhD ( The Graduate University for Advanced Studies )

Research Interests

  • Histology

  • Epigenetics

  • Germ cells

  • Stem cells

  • Molecular biology

  • Anatomy

Research Areas

  • Informatics / Life, health and medical informatics  / Bioinformatics

  • Life Science / Anatomy

  • Life Science / Genetics

  • Life Science / Developmental biology

Research History

  • Yokohama City University   Histology and Cell Biology, School of Medicine   Lecturer/Assistant Professor

    2019.4

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  • Yokohama City University   Histology and Cell Biology, School of Medicine   Assistant Professor

    2013.3 - 2019.3

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  • The Babraham Institute   Epigenetics Programme

    2009.4 - 2013.2

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  • National Institute of Genetics   Division of Human Genetics

    2006.4 - 2009.3

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Professional Memberships

  • Japan Society of Histochemistry and Cytochemistry

    2023.8

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  • THE JAPANESE ASSOCIATION OF ANATOMISTS

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  • THE MOLECULAR BIOLOGY SOCIETY OF JAPAN

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  • THE GENETICS SOCIETY OF JAPAN

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  • The Japanese Society for Epigenetics

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Papers

  • Abnormal H3K27me3 underlies degenerative spermatogonial stem cells in cryptorchid testis Reviewed International journal

    Kazushige Kuroha*, Ivana Dočkal*, Uroš Radović, Kuniko Nakajima, Ikue Hoshi, Shion Matsuda, Noriko Kojitani, Kazuyuki Ohbo, Shin-ichi Tomizawa

    Development   152 ( 2 )   dev.204239   2025.1

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    Authorship:Last author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:The Company of Biologists  

    Cryptorchidism is the most frequent congenital defect in newborn males characterized by the absence of the testis from the scrotum. Approximately 90% of patients with untreated bilateral cryptorchidism exhibit azoospermia due to defective spermatogenesis in the affected testis. While abnormal spermatogonial stem cell maintenance or differentiation is suggested to cause germ cell degeneration in the cryptorchid testis, underlying molecular mechanisms remain unclear. Here we profiled spermatogonial epigenetic landscapes using surgically induced cryptorchid testis in the mouse. We show that cryptorchidism leads to alterations in local, but not global H3K27me3 and H3K9me3 in undifferentiated spermatogonia. Of these, the loss of H3K27me3 was correlated with activation of developmental and proapoptotic pathway genes that are repressed by the polycomb machinery in germ cells. Cryptorchid spermatogonia exhibit the increase of H3K27me3 demethylases KDM6A and KMD6B. Furthermore, we reveal that an increased temperature leads to Kdm6a/b upregulation in germline stem cells cultured in vitro. Thus, our study suggests that temperature-dependent histone demethylation may induce mRNA dysregulation due to the partial loss of H3K27me3 in spermatogonia.

    DOI: 10.1242/dev.204239

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  • A behind-the-scenes role of BDNF in the survival and differentiation of spermatogonia Reviewed International journal

    Shin-ichi Tomizawa*, Kazushige Kuroha*, Michio Ono, Kuniko Nakajima, Kazuyuki Ohbo

    Asian Journal of Andrology   27 ( 1 )   37 - 43   2025.1

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    DOI: 10.4103/aja202457

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  • Spatial and temporal expression analysis of BMP signal modifiers, Smoc1 and Smoc2, from postnatal to adult developmental stages in the mouse testis. Reviewed

    Michio Ono, Kuniko Nakajima, Shin-ichi Tomizawa, Takayuki Shirakawa, Ippei Okada, Hirotomo Saitsu, Naomichi Matsumoto, Kazuyuki Ohbo

    Gene Expression Patterns   119383   2024.11

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    DOI: 10.1016/j.gep.2024.119383

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  • The non-canonical bivalent gene <i>Wfdc15a</i> controls spermatogenic protease and immune homeostasis Reviewed

    Shin-ichi Tomizawa, Rachel Fellows, Michio Ono, Kazushige Kuroha, Ivana Dočkal, Yuki Kobayashi, Keisuke Minamizawa, Koji Natsume, Kuniko Nakajima, Ikue Hoshi, Shion Matsuda, Masahide Seki, Yutaka Suzuki, Kazushi Aoto, Hirotomo Saitsu, Kazuyuki Ohbo

    Development   151 ( 18 )   dev202834   2024.9

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:The Company of Biologists  

    ABSTRACT

    Male infertility can be caused by chromosomal abnormalities, mutations and epigenetic defects. Epigenetic modifiers pre-program hundreds of spermatogenic genes in spermatogonial stem cells (SSCs) for expression later in spermatids, but it remains mostly unclear whether and how those genes are involved in fertility. Here, we report that Wfdc15a, a WFDC family protease inhibitor pre-programmed by KMT2B, is essential for spermatogenesis. We found that Wfdc15a is a non-canonical bivalent gene carrying both H3K4me3 and facultative H3K9me3 in SSCs, but is later activated along with the loss of H3K9me3 and acquisition of H3K27ac during meiosis. We show that WFDC15A deficiency causes defective spermiogenesis at the beginning of spermatid elongation. Notably, depletion of WFDC15A causes substantial disturbance of the testicular protease-antiprotease network and leads to an orchitis-like inflammatory response associated with TNFα expression in round spermatids. Together, our results reveal a unique epigenetic program regulating innate immunity crucial for fertility.

    DOI: 10.1242/dev.202834

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    Other Link: https://journals.biologists.com/dev/article-pdf/doi/10.1242/dev.202834/3566668/dev202834.pdf

  • Oxygen concentration affects de novo DNA methylation and transcription in in vitro cultured oocytes Reviewed

    Florence Naillat, Heba Saadeh, Joanna Nowacka-Woszuk, Lenka Gahurova, Fatima Santos, Shin-ichi Tomizawa, Gavin Kelsey

    Clinical Epigenetics   13   132   2021.6

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  • Maintenance DNA methylation in pre-meiotic germ cells regulates meiotic prophase by facilitating homologous chromosome pairing Reviewed International journal

    Yuki Takada, Ruken Yaman-Deveci, Takayuki Shirakawa, Jafar Sharif, Shin-ichi Tomizawa, Fumihito Miura, Takashi Ito, Michio Ono, Kuniko Nakajima, Yoko Koseki, Fuyuko Shiotani, Kei-ichiro Ishiguro, Kazuyuki Ohbo, Haruhiko Koseki

    Development   148 ( 10 )   dev194605   2021.5

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    <title>ABSTRACT</title>
    Heterochromatin-related epigenetic mechanisms, such as DNA methylation, facilitate pairing of homologous chromosomes during the meiotic prophase of mammalian spermatogenesis. In pro-spermatogonia, de novo DNA methylation plays a key role in completing meiotic prophase and initiating meiotic division. However, the role of maintenance DNA methylation in the regulation of meiosis, especially in the adult, is not well understood. Here, we reveal that NP95 (also known as UHRF1) and DNMT1 – two essential proteins for maintenance DNA methylation – are co-expressed in spermatogonia and are necessary for meiosis in male germ cells. We find that Np95- or Dnmt1-deficient spermatocytes exhibit spermatogenic defects characterized by synaptic failure during meiotic prophase. In addition, assembly of pericentric heterochromatin clusters in early meiotic prophase, a phenomenon that is required for subsequent pairing of homologous chromosomes, is disrupted in both mutants. Based on these observations, we propose that DNA methylation, established in pre-meiotic spermatogonia, regulates synapsis of homologous chromosomes and, in turn, quality control of male germ cells. Maintenance DNA methylation, therefore, plays a role in ensuring faithful transmission of both genetic and epigenetic information to offspring.

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  • <i>Tsga8</i> is required for spermatid morphogenesis and male fertility in mice. Reviewed International journal

    Yuki Kobayashi*, Shin-ichi Tomizawa*, Michio Ono, Kazushige Kuroha, Keisuke Minamizawa, Koji Natsume, Selma Dizdarević, Ivana Dočkal, Hiromitsu Tanaka, Tatsukata Kawagoe, Masahide Seki, Yutaka Suzuki, Narumi Ogonuki, Kimiko Inoue, Shogo Matoba, Konstantinos Anastassiadis, Nobuhisa Mizuki, Atsuo Ogura, Kazuyuki Ohbo *co-first

    Development   148 ( 8 )   dev196212   2021.4

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    During spermatogenesis, intricate gene expression is coordinately regulated by epigenetic modifiers, which are required for differentiation of spermatogonial stem cells (SSCs) contained among undifferentiated spermatogonia. We have previously found that KMT2B conveys H3K4me3 at bivalent and monovalent promoters in undifferentiated spermatogonia. Because these genes are expressed late in spermatogenesis or during embryogenesis, we expect that many of them are potentially programmed by KMT2B for future expression. Here, we show that one of the genes targeted by KMT2B, Tsga8, plays an essential role in spermatid morphogenesis. Loss of Tsga8 in mice leads to male infertility associated with abnormal chromosomal distribution in round spermatids, malformation of elongating spermatid heads and spermiation failure. Tsga8 depletion leads to dysregulation of thousands of genes, including the X-chromosome genes that are reactivated in spermatids, and insufficient nuclear condensation accompanied by reductions of TNP1 and PRM1, key factors for histone-to-protamine transition. Intracytoplasmic sperm injection (ICSI) of spermatids rescued the infertility phenotype, suggesting competency of the spermatid genome for fertilization. Thus, Tsga8 is a KMT2B target that is vitally necessary for spermiogenesis and fertility.

    DOI: 10.1242/dev.196212

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  • Gain-of-Function MN1 Truncation Variants Cause a Recognizable Syndrome with Craniofacial and Brain Abnormalities. Reviewed International journal

    Noriko Miyake, Hidehisa Takahashi, Kazuyuki Nakamura, Bertrand Isidor, Yoko Hiraki, Eriko Koshimizu, Masaaki Shiina, Kazunori Sasaki, Hidefumi Suzuki, Ryota Abe, Yayoi Kimura, Tomoko Akiyama, Shin-ichi Tomizawa, Tomonori Hirose, Kohei Hamanaka, Satoko Miyatake, Satomi Mitsuhashi, Takeshi Mizuguchi, Atsushi Takata, Kazuyuki Obo, Mitsuhiro Kato, Kazuhiro Ogata, Naomichi Matsumoto

    American Journal of Human Genetics   106 ( 1 )   13 - 25   2020.1

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    MN1 was originally identified as a tumor-suppressor gene. Knockout mouse studies have suggested that Mn1 is associated with craniofacial development. However, no MN1-related phenotypes have been established in humans. Here, we report on three individuals who have de novo MN1 variants that lead to a protein lacking the carboxyl (C) terminus and who presented with severe developmental delay, craniofacial abnormalities with specific facial features, and structural abnormalities in the brain. An in vitro study revealed that the deletion of the C-terminal region led to increased protein stability, an inhibitory effect on cell proliferation, and enhanced MN1 aggregation in nuclei compared to what occurred in the wild type, suggesting that a gain-of-function mechanism is involved in this disease. Considering that C-terminal deletion increases the fraction of intrinsically disordered regions of MN1, it is possible that altered phase separation could be involved in the mechanism underlying the disease. Our data indicate that MN1 participates in transcriptional regulation of target genes through interaction with the transcription factors PBX1, PKNOX1, and ZBTB24 and that mutant MN1 impairs the binding with ZBTB24 and RING1, which is an E3 ubiquitin ligase. On the basis of our findings, we propose the model that C-terminal deletion interferes with MN1's interaction molecules related to the ubiquitin-mediated proteasome pathway, including RING1, and increases the amount of the mutant protein; this increase leads to the dysregulation of MN1 target genes by inhibiting rapid MN1 protein turnover.

    DOI: 10.1016/j.ajhg.2019.11.011

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  • Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice. Reviewed International journal

    Kuniko Nakajima, Michio Ono, Uroš Radović, Selma Dizdarević, Shin-ichi Tomizawa, Kazushige Kuroha, Go Nagamatsu, Ikue Hoshi, Risa Matsunaga, Takayuki Shirakawa, Takeyuki Kurosawa, Yasunari Miyazaki, Masahide Seki, Yutaka Suzuki, Haruhiko Koseki, Masataka Nakamura, Toshio Suda, Kazuyuki Ohbo

    Disease Models & Mechanisms   12 ( 11 )   2019.11

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    Respiratory failure is a life-threatening problem for pre-term and term infants, yet many causes remain unknown. Here, we present evidence that whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (Wfdc2), a protease inhibitor previously unrecognized in respiratory disease, may be a causal factor in infant respiratory failure. Wfdc2 transcripts are detected in the embryonic lung and analysis of a Wfdc2-GFP knock-in mouse line shows that both basal and club cells, and type II alveolar epithelial cells (AECIIs), express Wfdc2 neonatally. Wfdc2-null-mutant mice display progressive atelectasis after birth with a lethal phenotype. Mutant lungs have multiple defects, including impaired cilia and the absence of mature club cells from the tracheo-bronchial airways, and malformed lamellar bodies in AECIIs. RNA sequencing shows significant activation of a pro-inflammatory pathway, but with low-quantity infiltration of mononuclear cells in the lung. These data demonstrate that Wfdc2 function is vitally important for lung aeration at birth and that gene deficiency likely causes failure of the lung mucosal barrier.

    DOI: 10.1242/dmm.040139

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  • Kmt2b conveys monovalent and bivalent H3K4me3 in mouse spermatogonial stem cells at germline and embryonic promoters. Reviewed International journal

    Shin-ichi Tomizawa, Yuki Kobayashi, Takayuki Shirakawa, Kumiko Watanabe, Keita Mizoguchi, Ikue Hoshi, Kuniko Nakajima, Jun Nakabayashi, Sukhdeep Singh, Andreas Dahl, Dimitra Alexopoulou, Masahide Seki, Yutaka Suzuki, Hélène Royo, Antoine H F M Peters, Konstantinos Anastassiadis, A Francis Stewar, Kazuyuki Ohbo

    Development   145 ( 23 )   dev169102   2018.11

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    The mammalian male germline is sustained by a pool of spermatogonial stem cells (SSCs) that can transmit both genetic and epigenetic information to offspring. However, the mechanisms underlying epigenetic transmission remain unclear. The histone methyltransferase Kmt2b is highly expressed in SSCs and is required for the SSC-to-progenitor transition. At the stem-cell stage, Kmt2b catalyzes H3K4me3 at bivalent H3K27me3-marked promoters as well as at promoters of a new class of genes lacking H3K27me3, which we call monovalent. Monovalent genes are mainly activated in late spermatogenesis, whereas most bivalent genes are mainly not expressed until embryonic development. These data suggest that SSCs are epigenetically primed by Kmt2b in two distinguishable ways for the upregulation of gene expression both during the spermatogenic program and through the male germline into the embryo. Because Kmt2b is also the major H3K4 methyltransferase for bivalent promoters in embryonic stem cells, we also propose that Kmt2b has the capacity to prime stem cells epigenetically.

    DOI: 10.1242/dev.169102

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  • Transcription and chromatin determinants of de novo DNA methylation timing in oocytes Reviewed

    Lenka Gahurova*, Shin-ichi Tomizawa*, Sebastien A. Smallwood, Kathleen R. Stewart-Morgan, Heba Saadeh, Jeesun Kim, Simon R. Andrews, Taiping Chen, Gavin Kelsey *co-first

    Epigenetics & Chromatin   10   25   2017.5

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    DOI: 10.1186/s13072-017-0133-5

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  • Dynamic changes in histone modifications precede de novo DNA methylation in oocytes Reviewed

    Kathleen R. Stewart, Lenka Veselovska, Jeesun Kim, Jiahao Huang, Heba Saadeh, Shin-ichi Tomizawa, Sebastien A. Smallwood, Taiping Chen, Gavin Kelsey

    Genes & Development   29 ( 23 )   2449 - 2462   2015.12

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    DOI: 10.1101/gad.271353.115

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  • Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape Reviewed

    Lenka Veselovska, Sebastien A. Smallwood, Heba Saadeh, Kathleen R. Stewart, Felix Krueger, Stéphanie Maupetit Méhouas, Philippe Arnaud, Shin-ichi Tomizawa, Simon Andrews, Gavin Kelsey

    Genome Biology   16 ( 1 )   209   2015.9

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    DOI: 10.1186/s13059-015-0769-z

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  • DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis Reviewed

    Naoki Kubo, Hidehiro Toh, Kenjiro Shirane, Takayuki Shirakawa, Hisato Kobayashi, Tetsuya Sato, Hidetoshi Sone, Yasuyuki Sato, Shin-ichi Tomizawa, Yoshinori Tsurusaki, Hiroki Shibata, Hirotomo Saitsu, Yutaka Suzuki, Naomichi Matsumoto, Mikita Suyama, Tomohiro Kono, Kazuyuki Ohbo, Hiroyuki Sasaki

    BMC Genomics   16 ( 1 )   624   2015.8

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    DOI: 10.1186/s12864-015-1833-5

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  • Epigenetic regulation in stem cell development, cell fate conversion, and reprogramming Reviewed

    Kazuyuki Ohbo, Shin-ichi Tomizawa

    Biomolecular Concepts   6 ( 1 )   1 - 9   2015.3

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    Authorship:Last author   Language:English   Publisher:De Gruyter Mouton  

    DOI: 10.1515/bmc-2014-0036

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  • Stem cell epigenetics: insights from studies on embryonic, induced pluripotent, and germline stem cells Reviewed

    Shin-ichi Tomizawa, Takayuki Shirakawa, Kazuyuki Ohbo

    Current Pathobiology Reports   2 ( 1 )   1 - 9   2014.3

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  • An epigenetic switch is crucial for spermatogonia to exit the undifferentiated state toward a Kit-positive identity Reviewed

    Takayuki Shirakawa, Ruken Yaman-Deveci, Shin-ichi Tomizawa, Yoshito Kamizato, Kuniko Nakajima, Hidetoshi Sone, Yasuyuki Sato, Jafar Sharif, Akio Yamashita, Yuki Takada-Horisawa, Shosei Yoshida, Kiyoe Ura, Masahiro Muto, Haruhiko Koseki, Toshio Suda, Kazuyuki Ohbo

    Development   140 ( 17 )   3565 - 3576   2013.9

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    DOI: 10.1242/dev.094045

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  • A distinct reprogramming strategy in zebrafish compared to mammals Invited

    Shin-ichi Tomizawa

    Experimental Medicine   31 ( 14 )   2242 - 2243   2013.9

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  • Sequences in the H19 ICR that are transcribed as small RNA in oocytes are dispensable for methylation imprinting in YAC transgenic mice Reviewed

    Takuya Takahashi, Hitomi Matsuzaki, Shin-ichi Tomizawa, Eiichi Okamura, Tomoko Ichiyanagi, Akiyoshi Fukamizu, Hiroyuki Sasaki, Keiji Tanimoto

    Gene   508 ( 1 )   26 - 34   2012.10

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    DOI: 10.1016/j.gene.2012.07.062

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  • Genomic imprinting and its relevance to congenital disease, infertility, molar pregnancy and induced pluripotent stem cell Reviewed

    Shin-ichi Tomizawa, Hiroyuki Sasaki

    Journal of Human Genetics   57 ( 2 )   84 - 91   2012.2

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    DOI: 10.1038/jhg.2011.151

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  • DNA methylation establishment during oocyte growth: mechanisms and significance Reviewed

    Shin-ichi Tomizawa, Joanna Nowacka-Woszuk, Gavin Kelsey

    International Journal of Developmental Biology   56 ( 10-12 )   867 - 875   2012

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    DOI: 10.1387/ijdb.120152gk

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  • Dynamic CpG island methylation landscape in oocytes and preimplantation embryos Reviewed

    Sebastien A. Smallwood, Shin-ichi Tomizawa, Felix Krueger, Nico Ruf, Natasha Carli, Anne Segonds-Pichon, Shun Sato, Kenichiro Hata, Simon R. Andrews, Gavin Kelsey

    Nature Genetics   43 ( 8 )   811 - U126   2011.8

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    DOI: 10.1038/ng.864

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  • Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Reviewed International journal

    Toshiaki Watanabe, Shin-ichi Tomizawa, Kohzoh Mitsuya, Yasushi Totoki, Yasuhiro Yamamoto, Satomi Kuramochi-Miyagawa, Naoko Iida, Yuko Hoki, Patrick J Murphy, Atsushi Toyoda, Kengo Gotoh, Hitoshi Hiura, Takahiro Arima, Asao Fujiyama, Takashi Sado, Tatsuhiro Shibata, Toru Nakano, Haifan Lin, Kenji Ichiyanagi, Paul D Soloway, Hiroyuki Sasaki

    Science   332 ( 6031 )   848 - 52   2011.5

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    Genomic imprinting causes parental origin-specific monoallelic gene expression through differential DNA methylation established in the parental germ line. However, the mechanisms underlying how specific sequences are selectively methylated are not fully understood. We have found that the components of the PIWI-interacting RNA (piRNA) pathway are required for de novo methylation of the differentially methylated region (DMR) of the imprinted mouse Rasgrf1 locus, but not other paternally imprinted loci. A retrotransposon sequence within a noncoding RNA spanning the DMR was targeted by piRNAs generated from a different locus. A direct repeat in the DMR, which is required for the methylation and imprinting of Rasgrf1, served as a promoter for this RNA. We propose a model in which piRNAs and a target RNA direct the sequence-specific methylation of Rasgrf1.

    DOI: 10.1126/science.1203919

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  • Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes Reviewed

    Shin-ichi Tomizawa, Hisato Kobayashi, Toshiaki Watanabe, Simon Andrews, Kenichiro Hata, Gavin Kelsey, Hiroyuki Sasaki

    Development   138 ( 5 )   811 - 820   2011.3

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    DOI: 10.1242/dev.061416

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  • Epigenetics of the cell Invited

    Shin-ichi Tomizawa, Hiroyuki Sasaki

    Gene & Medicine   上   145 - 148   2008.4

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  • Story of epigenetics Invited

    Hiroyuki Sasaki, Shin-ichi Tomizawa

    Farumashia   43 ( 4 )   310 - 314   2007.4

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▼display all

MISC

  • 精子幹細胞分化を制御するエピジェネティックな機構の解析

    大保和之, 南澤恵佑, 尾野道男, 中島久仁子, FELLOWS Rachel, 富澤信一

    日本解剖学会総会・全国学術集会抄録集   129th   2024

  • Role of a novel protease inhibitor for spermatogenesis and immune homeostasis

    富澤信一, FELLOWS Rachel, 尾野道男, 黒羽一誠, DOCKAL Ivana, 南澤恵佑, 鈴木穣, 才津浩智, 大保和之

    日本解剖学会総会・全国学術集会抄録集   128th   2023

  • Cryptorchidism induces abnormal epigenetic and transcriptional signatures in spermatogonia

    尾野道男, DOCKAL Ivana, RADOVIC Uros, 大保和之, 富澤信一

    日本解剖学会総会・全国学術集会抄録集   128th   2023

  • WFDCファミリーに属するプロテアーゼインヒビターWFDC2の発現及び機能解析

    林亜葵, 中島久仁子, 尾野道男, 富澤信一, 大保和之

    日本解剖学会総会・全国学術集会抄録集   127th   2022

  • Regulation of male germ cell development through KMT2B-dependent epigenetic programming

    富澤信一, 小林裕貴, FELLOWS Rachel, 尾野道男, 黒羽一誠, 田中宏光, 河越龍方, 才津浩智, 鈴木穣, 水木信久, 小倉淳郎, 大保和之

    日本解剖学会総会・全国学術集会抄録集   127th   2022

  • 精子幹細胞分化系列におけるエピジェネティックおよびトランスクリプトームの解析

    富澤信一, 小林裕貴, PETERS Antoine H.F.M., ANASTASSIADIS Konstantinos, STEWART A Francis, 関真秀, 鈴木穣, CLARK Stephen, KELSEY Gavin, 大保和之

    日本分子生物学会年会プログラム・要旨集   42nd   2019

  • エピジェネティックなエンハンサーマーカーからみた精子幹細胞

    大保和之, 富澤信一

    日本遺伝学会大会プログラム・予稿集   91st   2019

  • エピジェネティックな機構を介した精子発生制御メカニズムの解析

    小林裕貴, 尾野道男, 溝口敬太, 夏目幸治, 富澤信一, 河越龍方, 水木信久, 小倉淳郎, 大保和之

    日本解剖学会総会・全国学術集会講演プログラム・抄録集   124th   2019

  • Kmt2b(H3K4メチル化酵素)遺伝子欠損マウスにおける精細管の微細形態

    尾野道男, 小林裕貴, 富澤信一, 大保和之

    日本解剖学会総会・全国学術集会講演プログラム・抄録集   123rd   2018

  • 腎臓において,過剰動脈および回転異常を呈した一例

    荻窪まどか, 長谷川広大, 後藤希実, 張田佳代, 松沼まり, 氏赳人, 羽鳥尚寛, 富澤信一, 尾野道男, 鳥本いづみ, 吉田敬一郎, 宮木孝昌, 大保和之

    日本解剖学会総会・全国学術集会講演プログラム・抄録集   121st   2016

  • 尾部欠損及び鈎状突起の低形成と三葉化を示した1例

    川村飛翔, 渡辺武俊, 藤本優, 加藤伸忠, 大庭千佳, 祖父江瑤子, 氏赳人, 羽鳥尚寛, 富澤信一, 尾野道男, 鳥本いづみ, 吉田敬一郎, 宮木孝昌, 大保和之

    日本解剖学会総会・全国学術集会講演プログラム・抄録集   121st   2016

  • 新生仔マウスの精原幹細胞の形成と分化における全ゲノムDNAメチル化およびトランスクリプトーム解析

    久保 直樹, 藤 英博, 白根 健次郎, 白川 峰征, 小林 久人, 佐藤 哲也, 曾根 秀利, 佐藤 康人, 富澤 信一, 鶴崎 美徳, 柴田 弘紀, 才津 浩智, 鈴木 穣, 松本 直通, 須山 幹太, 河野 友宏, 大保 和之, 佐々木 裕之

    日本生化学会大会・日本分子生物学会年会合同大会講演要旨集   88回・38回   [1P0606] - [1P0606]   2015.12

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    Language:English   Publisher:(公社)日本生化学会  

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  • 核内微細形態変化とエピジェネティックな変化の精巣幹細胞分化における役割

    富澤信一, 白川峰征, 大保和之

    日本解剖学会総会・全国学術集会講演プログラム・抄録集   119th   2014

  • マウス新生仔期の精原幹細胞の分化におけるメチローム変動

    久保直樹, 藤英博, 白根健次郎, 白根健次郎, 白川峰征, 神里亮人, 曾根秀利, 佐藤康人, 鶴崎美徳, 富澤信一, 柴田弘紀, 才津浩智, 松本直通, 大保和之, 佐々木裕之, 佐々木裕之

    日本分子生物学会年会プログラム・要旨集   36th   2013

  • Comprehensive methylome analysis to the identification of new imprinted genes

    Natasha Carli, Felix Krueger, Sebastien A. Smallwood, Shin-Ichi Tomizawa, Luisa Vigevani, Anne Segonds-Pichon, Wendy Dean, Simon R. Andrews, Gavin Kelsey

    GENETICS RESEARCH   94 ( 6 )   354 - 355   2012.12

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    Language:English   Publishing type:Research paper, summary (international conference)  

    Web of Science

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  • マウス卵子におけるnon-CpGメチル化機構の解析

    白根健次郎, 千葉初音, 富澤信一, 秦健一郎, 佐々木裕之

    日本分子生物学会年会プログラム・要旨集   34th   2011

  • piRNAによるインプリント遺伝子Rasgrf1のDNAメチル化制御

    渡部聡朗, 三ツ矢幸造, 宮川さとみ, 中馬新一郎, 富澤信一, 十時泰, 豊田敦, 山本耕裕, 保木裕子, 佐渡敬, 野瀬俊明, 仲野徹, 佐々木裕之

    日本RNA学会年会要旨集   11th   50   2009.7

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    Language:Japanese  

    J-GLOBAL

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  • マウス生殖細胞におけるインプリント領域のDNAメチル化解析

    富澤信一, 富澤信一, 小林久人, 渡部聡朗, 渡部聡朗, 堀池浩子, 佐々木裕之, 佐々木裕之

    生化学   2008

  • PCB分解菌Alcaligenes denitrificans A41株に存在するgenomic island(GI)の水平伝達

    今村俊規, 富澤信一, 前田理久

    日本農芸化学会関東支部講演要旨集   2007 ( Nov )   2007

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Awards

  • Hall of Fame, Best Teacher Award

    2024.5   Yokohama City University School of Medicine  

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  • Best Teacher Award 2022

    2023.5   Yokohama City University School of Medicine  

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  • Best Teacher Award 2021

    2022.5   Yokohama City University School of Medicine  

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  • Best Teacher Award 2020

    2021.5   Yokohama City University School of Medicine  

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Research Projects

  • Translational regulation of spermatogonial stem cell differentiation and subpopulation maintenance

    Grant number:25K12619  2025.4 - 2028.3

    JSPS KAKENHI  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C) 

    Kazushige Kuroha, Shinichi Tomizawa

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    Authorship:Coinvestigator(s) 

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  • Epicode for germ cell priming

    Grant number:24A306  2025.4 - 2027.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Transformative Research Areas (A)

    Shinichi Tomizawa

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    Authorship:Principal investigator 

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  • DNA methylation establishment in human male germ cells

    Grant number:24KK0143  2024.9 - 2028.3

    JSPS KAKENHI  JSPS KAKENHI  Grant-in-Aid for Fund for the Promotion of Joint International Research

    Toshiaki Watanabe, Shinichi Tomizawa, Musashi Kubiura-Ichimaru

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    Authorship:Coinvestigator(s) 

    Grant amount:\20930000 ( Direct Cost: \16100000 、 Indirect Cost:\4830000 )

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  • Differentiation of stem cell subpopulation for spermatogenesis

    2023.4 - 2026.3

    JSPS KAKENHI  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C) 

    Shinichi Tomizawa

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    Authorship:Principal investigator 

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  • Molecular basis of infertility associated with epigenome abnormality

    Grant number:22H04925  2022.4

    JSPS KAKENHI  JSPS KAKENHI Grant Number JP22H04925 (PAGS) 

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    Authorship:Principal investigator 

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  • Molecular basis of infertility associated with epigenome abnormality

    Grant number:16H06279  2021.4

    JSPS KAKENHI  16H06279 

    Shinichi Tomizawa

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    Authorship:Principal investigator 

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  • Molecular basis of infertility associated with epigenome abnormality

    Grant number:20K09543  2020.4 - 2023.3

    JSPS KAKENHI  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C) 

    Shinichi Tomizawa

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    Grant amount:\4290000 ( Direct Cost: \3300000 、 Indirect Cost:\990000 )

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  • Analysis of epigenome infertility mechanisms by the state-of-art single cell and ultra low-input histone modification analysis methods

    Grant number:19KK0183  2019.10 - 2023.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))  Fund for the Promotion of Joint International Research (Fostering Joint International Research (B))

    Kazuyuki Ohbo, Shinichi Tomizawa, Ayako Suzuki

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    Grant amount:\18460000 ( Direct Cost: \14200000 、 Indirect Cost:\4260000 )

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  • Identification and dynamic analysis of true stem cells in testicular stem cells using the latest single cell analysis method

    Grant number:19K07250  2019.4 - 2022.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (C)  Grant-in-Aid for Scientific Research (C)

    Kazuyuki Ohbo, Shinichi Tomizawa, Michio Ono

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    Grant amount:\4420000 ( Direct Cost: \3400000 、 Indirect Cost:\1020000 )

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  • Male infertility associated with epigenetic mechanisms

    2019

    The Naito Foundation  Research Grant 

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

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  • Quality control for correct spermatogenesis and post-fertilization development

    2019

    The Takeda Science Foundation  Mecical Research Grant 

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

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  • Identification of genes required for spermatogonial stem cell differentiation

    Grant number:17K15549  2017.4 - 2019.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

    Grant amount:\4160000 ( Direct Cost: \3200000 、 Indirect Cost:\960000 )

    In this study, we performed genome-wide transcriptome and epigenome analyses to understand the proliferation and differentiation mechanisms of spermatogonial stem cells (SSCs) in mammals. We collected mouse SSCs and progenitor spermatonia from mouse testis and analysed mRNA and DNA methylation status at the single cell level (M&T-seq). We found that SSCs are potentially heterogeneous with subpopulations showing different transcription and methylation status. Furthermore, from histological and histone modification analyses, we found that a histone methyltransferase Kmt2b plays an essential role for SSC differentiation.

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  • Role of chromocenter formation in cellular differentiation

    Grant number:16K15174  2016.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research  Grant-in-Aid for Challenging Exploratory Research

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

    Grant amount:\3640000 ( Direct Cost: \2800000 、 Indirect Cost:\840000 )

    Spermatogonial stem cells support a lifelong process of spermatogenesis. Epigenetic factors and higher-order nuclear architecture are implicated to regulate changes in expression of a number of genes important for spermatogonial stem cell differentiation. During this process, it is reported that apparent chromocenter formation as well as a series of epigenetic changes occur. This study aimed to establish a method to investigate the role of chromocenter formation in the differentiation step. However, the chromocenter isolation protocol based on a published literature did not appear to work for a small number of cells, and further optimization was considered necessary.

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  • Study of a protein complex for tissue stem cell proliferation and maintenance

    2014.4 - 2017.3

    MEXT  Creation of Innnovation Center for Advanced Interdisciplinary Research Areas Program 

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

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  • The role of nuclear structure and an epigenetic switch in spermatogonial stem cell differentiation

    Grant number:26860137  2014.4 - 2017.3

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research Grant-in-Aid for Young Scientists (B)  Grant-in-Aid for Young Scientists (B)

    Shinichi Tomizawa

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    Grant amount:\4030000 ( Direct Cost: \3100000 、 Indirect Cost:\930000 )

    It is well established that long-term spermatogenesis in mammals is supported by spermatogonial stem cells (SSCs). However, the molecular mechanisms governing SSC maintenance and differentiation is poorly understood. This study focused on dynamic changes in nuclear structure and epigenetic status that occur during SSC differentiation. These changes are important for gene expression programs and hence may greatly contribute to the conversion of cellular characteristics as SSCs differentiate. To identify the epigenetic changes in more detail, SSCs and progenitor cells were sorted and the global epigenetic status of each cell population was analyzed.

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  • Analysis of small RNAs for testicular stem cell differentiation

    2013 - 2014

    Yokohama Foundation for Advancement of Medical Science  Grant for Promoted Research 

    Shinichi Tomizawa

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    Authorship:Principal investigator  Grant type:Competitive

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Teaching Experience

  • Structure and Function of the Human Body I

    2025.4 Institution:Kanagawa Eisei Gakuen College

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  • Anatomy and Physiology

    2020.7 Institution:School of Science, Yokohama City University

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  • Mechanism of the Human Body

    2020.4 - 2024.3 Institution:Yokohama Central Hospital Affiliated Nursing School

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  • Histology

    2013.4 Institution:Graduate School of Medicine, Yokohama City University

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  • Histology

    2013.4 Institution:School of Medicine, Yokohama City University

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  • Anatomy and Development

    2013.4 Institution:School of Medicine, Yokohama City University

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  • Micromorphology

    2013.4 Institution:Graduate School of Medicine, Yokohama City University

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