2025/06/01 更新

所属以外の情報はresearchmapへの登録情報を転載しています。

写真a

アキヤマ トモヒコ
秋山 智彦
Tomohiko Akiyama
所属
医学研究科 医科学専攻 分子生物学 助教
医学部 医学科
職名
助教
外部リンク

学位

  • 博士(生命科学) ( 東京大学 )

研究キーワード

  • ヒトゲノム

  • 幹細胞

  • エンハンサー変異

  • 転写因子

  • エピジェネティクス

  • 性差形成

  • 着床前初期胚

  • 反復配列

  • 分化制御

研究分野

  • ライフサイエンス / ゲノム生物学

  • ライフサイエンス / 発生生物学

  • ライフサイエンス / 分子生物学

学歴

  • 東京大学   大学院新領域創成科学研究科   博士課程

    2005年4月 - 2008年3月

      詳細を見る

  • 東京大学   大学院新領域創成科学研究科   修士課程

    2003年4月 - 2005年3月

      詳細を見る

  • 早稲田大学   理工学部

    1999年4月 - 2003年3月

      詳細を見る

経歴

  • 横浜市立大学医学部

    2022年4月 - 現在

      詳細を見る

  • 慶應義塾大学   医学部 坂口光洋記念講座   講師

    2020年4月 - 2022年3月

      詳細を見る

  • 慶應義塾大学   システム医学講座   助教

    2018年7月 - 2020年3月

      詳細を見る

  • 慶應義塾大学   システム医学講座   特任助教

    2013年10月 - 2018年6月

      詳細を見る

  • National Institute on Aging, National Institutes of Health, USA   日本学術振興会海外特別研究員

    2011年10月 - 2013年9月

      詳細を見る

  • 東京大学   特任研究員

    2008年4月 - 2011年9月

      詳細を見る

  • 日本学術振興会   特別研究員(DC1)

    2005年4月 - 2008年3月

      詳細を見る

▼全件表示

所属学協会

論文

  • Chimera RNA transcribed from integrated HPV18 genome with adjacent host genomic region promotes oncogenic gene expression through condensate formation. 査読 国際誌

    Kazuki Furugori, Hidefumi Suzuki, Ryota Abe, Keiko Horiuchi, Tomohiko Akiyama, Tomonori Hirose, Atsushi Toyoda, Hidehisa Takahashi

    Genes to cells : devoted to molecular & cellular mechanisms   2024年5月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Most cervical cancers are caused by human papillomavirus (HPV) infection. In HeLa cells, the HPV18 viral genome is integrated at chromosome 8q24.21 and activates transcription of the proto-oncogene c-Myc. However, the mechanism of how the integrated HPV genome and its transcribed RNAs exhibit transcription activation function has not been fully elucidated. In this study, we found that HPV18 transcripts contain an enhancer RNA-like function to activate proximal genes including CCAT1-5L and c-Myc. We showed that the human genome-integrated HPV18 genes are activated by transcription coregulators including BRD4 and Mediator. The transcribed HPV18 RNAs form a liquid-like condensate at chromosome 8q24.21 locus, which in turn accumulates RNA polymerase II. Moreover, we focused on a relatively uncharacterized transcript from the upstream region of CCAT1, named URC. The URC RNA is transcribed as a chimera RNA with HPV18 and is composed of the 3'-untranslated region of the HPV18 transcript. We experimentally showed that the URC contributes to stabilization of HPV18 RNAs by supplying a polyadenylation site for the HPV18 transcript. Our findings suggest that integrated HPV18 at 8q24.21 locus produces HPV18-URC chimera RNA and promotes tumorigenesis through RNA-based condensate formation.

    DOI: 10.1111/gtc.13121

    PubMed

    researchmap

  • ZSCAN4-binding motif - TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes 査読

    Tomohiko Akiyama, Kei-ichiro Ishiguro, Nana Chikazawa, Shigeru B H Ko, Masashi Yukawa, Minoru S H Ko

    DNA Research   2023年12月

     詳細を見る

    担当区分:筆頭著者   掲載種別:研究論文(学術雑誌)   出版者・発行元:Oxford University Press (OUP)  

    Abstract

    The Zinc finger and SCAN domain containing 4 (ZSCAN4) protein, expressed transiently in pluripotent stem cells, gametes, and early embryos, extends telomeres, enhances genome stability, and improves karyotypes in mouse embryonic stem (mES) cells. To gain insights into the mechanism of ZSCAN4 function, we identified genome-wide binding sites of endogenous ZSCAN4 protein using ChIP-seq technology in mouse and human ES cells, where the expression of endogenous ZSCAN4 was induced by treating cells with retinoic acids or by overexpressing DUX4. We revealed that both mouse and human ZSCAN4 bind to the TGCACAC motif located in CA/TG microsatellite repeats, which are known to form unstable left-handed duplexes called Z-DNA that can induce double-strand DNA breaks and mutations. These ZSCAN4 binding sites are mostly located in intergenic and intronic regions of the genomes. By generating ZSCAN4 knockout in human ES cells, we showed that ZSCAN4 does not seem to be involved in transcriptional regulation. We also found that ectopic expression of mouse ZSCAN4 enhances the suppression of chromatin at ZSCAN4-binding sites. These results together suggest that some of the ZSCAN4 functions are mediated by binding to the error-prone regions in mouse and human genomes.

    DOI: 10.1093/dnares/dsad029

    researchmap

  • Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin. 国際誌

    Sonny Arora, Jianyu Yang, Tomohiko Akiyama, Daniela Q James, Alexis Morrissey, Thomas R Blanda, Nitika Badjatia, William K M Lai, Minoru S H Ko, B Franklin Pugh, Shaun Mahony

    bioRxiv : the preprint server for biology   2023年10月

     詳細を見る

    記述言語:英語  

    The DNA-binding activities of transcription factors (TFs) are influenced by both intrinsic sequence preferences and extrinsic interactions with cell-specific chromatin landscapes and other regulatory proteins. Disentangling the roles of these binding determinants remains challenging. For example, the FoxA subfamily of Forkhead domain (Fox) TFs are known pioneer factors that can bind to relatively inaccessible sites during development. Yet FoxA TF binding also varies across cell types, pointing to a combination of intrinsic and extrinsic forces guiding their binding. While other Forkhead domain TFs are often assumed to have pioneering abilities, how sequence and chromatin features influence the binding of related Fox TFs has not been systematically characterized. Here, we present a principled approach to compare the relative contributions of intrinsic DNA sequence preference and cell-specific chromatin environments to a TF's DNA-binding activities. We apply our approach to investigate how a selection of Fox TFs (FoxA1, FoxC1, FoxG1, FoxL2, and FoxP3) vary in their binding specificity. We over-express the selected Fox TFs in mouse embryonic stem cells, which offer a platform to contrast each TF's binding activity within the same preexisting chromatin background. By applying a convolutional neural network to interpret the Fox TF binding patterns, we evaluate how sequence and preexisting chromatin features jointly contribute to induced TF binding. We demonstrate that Fox TFs bind different DNA targets, and drive differential gene expression patterns, even when induced in identical chromatin settings. Despite the association between Forkhead domains and pioneering activities, the selected Fox TFs display a wide range of affinities for preexiting chromatin states. Using sequence and chromatin feature attribution techniques to interpret the neural network predictions, we show that differential sequence preferences combined with differential abilities to engage relatively inaccessible chromatin together explain Fox TF binding patterns at individual sites and genome-wide.

    DOI: 10.1101/2023.10.06.561228

    PubMed

    researchmap

  • Functional and long-lived melanocytes from human pluripotent stem cells with transient ectopic expression of JMJD3. 査読 国際誌

    Chie Kobori, Ryo Takagi, Ryo Yokomizo, Sakie Yoshihara, Mai Mori, Hiroto Takahashi, Palaksha Kanive Javaregowda, Tomohiko Akiyama, Minoru S H Ko, Kazuo Kishi, Akihiro Umezawa

    Stem cell research & therapy   14 ( 1 )   242 - 242   2023年9月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    BACKGROUND: Melanocytes are an essential part of the epidermis, and their regeneration has received much attention because propagation of human adult melanocytes in vitro is too slow for clinical use. Differentiation from human pluripotent stem cells to melanocytes has been reported, but the protocols to produce them require multiple and complex differentiation steps. METHOD: We differentiated human embryonic stem cells (hESCs) that transiently express JMJD3 to pigmented cells. We investigated whether the pigmented cells have melanocytic characteristics and functions by qRT-PCR, immunocytochemical analysis and flow cytometry. We also investigated their biocompatibility by injecting the cells into immunodeficient mice for clinical use. RESULT: We successfully differentiated and established a pure culture of melanocytes. The melanocytes maintained their growth rate for a long time, approximately 200 days, and were functional. They exhibited melanogenesis and transfer of melanin to peripheral keratinocytes. Moreover, melanocytes simulated the developmental processes from melanoblasts to melanocytes. The melanocytes had high engraftability and biocompatibility in the immunodeficient mice. CONCLUSION: The robust generation of functional and long-lived melanocytes are key to developing clinical applications for the treatment of pigmentary skin disorders.

    DOI: 10.1186/s13287-023-03479-1

    PubMed

    researchmap

  • MED26-containing Mediator may orchestrate multiple transcription processes through organization of nuclear bodies. 国際誌

    Hidefumi Suzuki, Kazuki Furugori, Ryota Abe, Shintaro Ogawa, Sayaka Ito, Tomohiko Akiyama, Keiko Horiuchi, Hidehisa Takahashi

    BioEssays : news and reviews in molecular, cellular and developmental biology   e2200178   2023年2月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Mediator is a coregulatory complex that plays essential roles in multiple processes of transcription regulation. One of the human Mediator subunits, MED26, has a role in recruitment of the super elongation complex (SEC) to polyadenylated genes and little elongation complex (LEC) to non-polyadenylated genes, including small nuclear RNAs (snRNAs) and replication-dependent histone (RDH) genes. MED26-containing Mediator plays a role in 3' Pol II pausing at the proximal region of transcript end sites in RDH genes through recruitment of Cajal bodies (CBs) to histone locus bodies (HLBs). This finding suggests that Mediator is involved in the association of CBs with HLBs to facilitate 3' Pol II pausing and subsequent 3'-end processing by supplying 3'-end processing factors from CBs. Thus, we argue the possibility that Mediator is involved in the organization of nuclear bodies to orchestrate multiple processes of gene transcription.

    DOI: 10.1002/bies.202200178

    PubMed

    researchmap

  • Purification of cardiomyocytes and neurons derived from human pluripotent stem cells by inhibition of de novo fatty acid synthesis. 招待 査読 国際誌

    Sho Tanosaki, Tomohiko Akiyama, Sayaka Kanaami, Jun Fujita, Minoru S H Ko, Keiichi Fukuda, Shugo Tohyama

    STAR protocols   3 ( 2 )   101360 - 101360   2022年6月

     詳細を見る

    担当区分:筆頭著者   記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Here we describe a protocol to obtain highly pure cardiomyocytes and neurons from human induced pluripotent stem cells (hiPSCs) via metabolic selection processes. Compared to conventional purification protocols, this approach is easier to perform and scale up and more cost-efficient. The protocol can be applied to hiPSCs and human embryonic stem cells. For complete details on the use and execution of this protocol, please refer to Tohyama et al. (2016) and Tanosaki et al. (2020).

    DOI: 10.1016/j.xpro.2022.101360

    PubMed

    researchmap

  • Meiosis-specific ZFP541 repressor complex promotes developmental progression of meiotic prophase towards completion during mouse spermatogenesis. 査読 国際誌

    Yuki Horisawa-Takada, Chisato Kodera, Kazumasa Takemoto, Akihiko Sakashita, Kenichi Horisawa, Ryo Maeda, Ryuki Shimada, Shingo Usuki, Sayoko Fujimura, Naoki Tani, Kumi Matsuura, Tomohiko Akiyama, Atsushi Suzuki, Hitoshi Niwa, Makoto Tachibana, Takashi Ohba, Hidetaka Katabuchi, Satoshi H Namekawa, Kimi Araki, Kei-Ichiro Ishiguro

    Nature communications   12 ( 1 )   3184 - 3184   2021年6月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    During spermatogenesis, meiosis is accompanied by a robust alteration in gene expression and chromatin status. However, it remains elusive how the meiotic transcriptional program is established to ensure completion of meiotic prophase. Here, we identify a protein complex that consists of germ-cell-specific zinc-finger protein ZFP541 and its interactor KCTD19 as the key transcriptional regulators in mouse meiotic prophase progression. Our genetic study shows that ZFP541 and KCTD19 are co-expressed from pachytene onward and play an essential role in the completion of the meiotic prophase program in the testis. Furthermore, our ChIP-seq and transcriptome analyses identify that ZFP541 binds to and suppresses a broad range of genes whose function is associated with biological processes of transcriptional regulation and covalent chromatin modification. The present study demonstrates that a germ-cell specific complex that contains ZFP541 and KCTD19 promotes the progression of meiotic prophase towards completion in male mice, and triggers the reconstruction of the transcriptional network and chromatin organization leading to post-meiotic development.

    DOI: 10.1038/s41467-021-23378-4

    PubMed

    researchmap

  • Synthetic mRNA-based differentiation method enables early detection of Parkinson's phenotypes in neurons derived from Gaucher disease-induced pluripotent stem cells. 査読 国際誌

    Tomohiko Akiyama, Saeko Sato, Shigeru B H Ko, Osamu Sano, Sho Sato, Masayo Saito, Hiroaki Nagai, Minoru S H Ko, Hidehisa Iwata

    Stem cells translational medicine   10 ( 4 )   572 - 581   2021年4月

     詳細を見る

    担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Gaucher disease, the most prevalent metabolic storage disorder, is caused by mutations in the glucocerebrosidase gene GBA1, which lead to the accumulation of glucosylceramide (GlcCer) in affected cells. Gaucher disease type 1 (GD1), although defined as a nonneuronopathic subtype, is accompanied by an increased risk of Parkinson's disease. To gain insights into the association of progressive accumulation of GlcCer and the Parkinson's disease phenotypes, we generated dopaminergic (DA) neurons from induced pluripotent stem cells (iPSCs) derived from a GD1 patient and a healthy donor control, and measured GlcCer accumulation by liquid chromatography-mass spectrometry. We tested two DA neuron differentiation methods: a well-established method that mimics a step-wise developmental process from iPSCs to neural progenitor cells, and to DA neurons; and a synthetic mRNA-based method that overexpresses a transcription factor in iPSCs. GD1-specific accumulation of GlcCer was detected after 60 days of differentiation by the former method, whereas it was detected after only 10 days by the latter method. With this synthetic mRNA-based rapid differentiation method, we found that the metabolic defect in GD1 patient cells can be rescued by the overexpression of wild-type GBA1 or the treatment with an inhibitor for GlcCer synthesis. Furthermore, we detected the increased phosphorylation of α-synuclein, a biomarker for Parkinson's disease, in DA neurons derived from a GD1 patient, which was significantly decreased by the overexpression of wild-type GBA1. These results suggest that synthetic mRNA-based method accelerates the analyses of the pathological mechanisms of Parkinson's disease in GD1 patients and possibly facilitates drug discovery processes.

    DOI: 10.1002/sctm.20-0302

    PubMed

    researchmap

  • Fatty Acid Synthesis Is Indispensable for Survival of Human Pluripotent Stem Cells. 査読 国際誌

    Sho Tanosaki, Shugo Tohyama, Jun Fujita, Shota Someya, Takako Hishiki, Tomomi Matsuura, Hiroki Nakanishi, Takayo Ohto-Nakanishi, Tomohiko Akiyama, Yuika Morita, Yoshikazu Kishino, Marina Okada, Hidenori Tani, Yusuke Soma, Kazuaki Nakajima, Hideaki Kanazawa, Masahiro Sugimoto, Minoru S H Ko, Makoto Suematsu, Keiichi Fukuda

    iScience   23 ( 9 )   101535 - 101535   2020年9月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    The role of lipid metabolism in human pluripotent stem cells (hPSCs) is poorly understood. We have used large-scale targeted proteomics to demonstrate that undifferentiated hPSCs express different fatty acid (FA) biosynthesis-related enzymes, including ATP citrate lyase and FA synthase (FASN), than those expressed in hPSC-derived cardiomyocytes (hPSC-CMs). Detailed lipid profiling revealed that inhibition of FASN resulted in significant reduction of sphingolipids and phosphatidylcholine (PC); moreover, we found that PC was the key metabolite for cell survival in hPSCs. Inhibition of FASN induced cell death in undifferentiated hPSCs via mitochondria-mediated apoptosis; however, it did not affect cell survival in hPSC-CMs, neurons, or hepatocytes as there was no significant reduction of PC. Furthermore, we did not observe tumor formation following transplantation of FASN inhibitor-treated cells. Our findings demonstrate the importance of de novo FA synthesis in the survival of undifferentiated hPSCs and suggest applications for FASN inhibition in regenerative medicine.

    DOI: 10.1016/j.isci.2020.101535

    PubMed

    researchmap

  • Generation and Profiling of 2,135 Human ESC Lines for the Systematic Analyses of Cell States Perturbed by Inducing Single Transcription Factors. 査読 国際誌

    Yuhki Nakatake, Shigeru B H Ko, Alexei A Sharov, Shunichi Wakabayashi, Miyako Murakami, Miki Sakota, Nana Chikazawa, Chiaki Ookura, Saeko Sato, Noriko Ito, Madoka Ishikawa-Hirayama, Siu Shan Mak, Lars Martin Jakt, Tomoo Ueno, Ken Hiratsuka, Misako Matsushita, Sravan Kumar Goparaju, Tomohiko Akiyama, Kei-Ichiro Ishiguro, Mayumi Oda, Norio Gouda, Akihiro Umezawa, Hidenori Akutsu, Kunihiro Nishimura, Ryo Matoba, Osamu Ohara, Minoru S H Ko

    Cell reports   31 ( 7 )   107655 - 107655   2020年5月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Transcription factors (TFs) play a pivotal role in determining cell states, yet our understanding of the causative relationship between TFs and cell states is limited. Here, we systematically examine the state changes of human pluripotent embryonic stem cells (hESCs) by the large-scale manipulation of single TFs. We establish 2,135 hESC lines, representing three clones each of 714 doxycycline (Dox)-inducible genes including 481 TFs, and obtain 26,998 microscopic cell images and 2,174 transcriptome datasets-RNA sequencing (RNA-seq) or microarrays-48 h after the presence or absence of Dox. Interestingly, the expression of essentially all the genes, including genes located in heterochromatin regions, are perturbed by these TFs. TFs are also characterized by their ability to induce differentiation of hESCs into specific cell lineages. These analyses help to provide a way of classifying TFs and identifying specific sets of TFs for directing hESC differentiation into desired cell types.

    DOI: 10.1016/j.celrep.2020.107655

    PubMed

    researchmap

  • Induced Pluripotent Stem Cells Reprogrammed with Three Inhibitors Show Accelerated Differentiation Potentials with High Levels of 2-Cell Stage Marker Expression 査読 国際誌

    Nishihara Koji, Shiga Takahiro, Nakamura Eri, Akiyama Tomohiko, Sasaki Takashi, Suzuki Sadafumi, Ko Minoru S. H, Tada Norihiro, Okano Hideyuki, Akamatsu Wado

    STEM CELL REPORTS   12 ( 2 )   305 - 318   2019年2月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1016/j.stemcr.2018.12.018

    Web of Science

    PubMed

    researchmap

  • Induction of human pluripotent stem cells into kidney tissues by synthetic mRNAs encoding transcription factors 査読

    Hiratsuka K, Monkawa T, Akiyama T, Nakatake Y, Oda M, Goparaju SK, Kimura H, Chikazawa-Nohtomi N, Sato S, Ishiguro K, Yamaguchi S, Suzuki S, Morizane R, Ko BSH, Itoh H, Ko MSK

    Scientific reports   9 ( doi: 10.1038/s41598-018-37485- )   2019年1月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    The derivation of kidney tissues from human pluripotent stem cells (hPSCs) and its application for replacement therapy in end-stage renal disease have been widely discussed. Here we report that consecutive transfections of two sets of synthetic mRNAs encoding transcription factors can induce rapid and efficient differentiation of hPSCs into kidney tissues, termed induced nephron-like organoids (iNephLOs). The first set - FIGLA, PITX2, ASCL1 and TFAP2C, differentiated hPSCs into SIX2+SALL1+ nephron progenitor cells with 92% efficiency within 2 days. Subsequently, the second set - HNF1A, GATA3, GATA1 and EMX2, differentiated these cells into PAX8+LHX1+ pretubular aggregates in another 2 days. Further culture in both 2-dimensional and 3-dimensional conditions produced iNephLOs containing cells characterized as podocytes, proximal tubules, and distal tubules in an additional 10 days. Global gene expression profiles showed similarities between iNephLOs and the human adult kidney, suggesting possible uses of iNephLOs as in vitro models for kidneys.<br />

    DOI: 10.1038/s41598-018-37485-8

    PubMed

    researchmap

  • Efficient differentiation of human pluripotent stem cells into skeletal muscle cells by combining RNA-based MYOD1-expression and POU5F1-silencing 査読

    Tomohiko Akiyama, Saeko Sato, Nana Chikazawa-Nohtomi, Atsumi Soma, Hiromi Kimura, Shunichi Wakabayashi, Shigeru B. H. Ko, Minoru S. H. Ko

    Scientific Reports   8 ( 1 )   2018年12月

     詳細を見る

    担当区分:筆頭著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Nature Publishing Group  

    Direct generation of skeletal muscle cells from human pluripotent stem cells (hPSCs) would be beneficial for drug testing, drug discovery, and disease modelling in vitro. Here we show a rapid and robust method to induce myogenic differentiation of hPSCs by introducing mRNA encoding MYOD1 together with siRNA-mediated knockdown of POU5F1 (also known as OCT4 or OCT3/4). This integration-free approach generates functional skeletal myotubes with sarcomere-like structure and a fusion capacity in several days. The POU5F1 silencing facilitates MYOD1 recruitment to the target promoters, which results in the significant activation of myogenic genes in hPSCs. Furthermore, deep sequencing transcriptome analyses demonstrated that POU5F1-knockdown upregulates the genes associated with IGF- and FGF-signaling and extracellular matrix that may also support myogenic differentiation. This rapid and direct differentiation method may have potential applications in regenerative medicine and disease therapeutics for muscle disorders such as muscular dystrophy.

    DOI: 10.1038/s41598-017-19114-y

    Web of Science

    Scopus

    researchmap

  • Establishment of a rapid and footprint-free protocol for differentiation of human embryonic stem cells into pancreatic endocrine cells with synthetic mRNAs encoding transcription factors 査読

    Ida H, Akiyama T, Ishiguro K, Goparaju SK, Nakatake Y, Chikazawa-Nohtomi N, Sato S, Kimura H, Yokoyama Y, Nagino M, Ko MSH, Ko SBH

    Stem Cell Research & Therapy   9 ( 277 )   2018年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1186/s13287-018-1038-3

    PubMed

    researchmap

  • Expression analysis of the endogenous Zscan4 locus and its coding proteins in mouse ES cells and preimplantation embryos 査読

    Kei-ichiro Ishiguro, Yuhki Nakatake, Nana Chikazawa-Nohtomi, Hiromi Kimura, Tomohiko Akiyama, Mayumi Oda, Shigeru B. H. Ko, Minoru S. H. Ko

    IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL   53 ( 2 )   179 - 190   2017年2月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER  

    Mouse Zinc finger and SCAN domain containing 4 (Zscan4) is encoded in multiple copies of Zscan4 genes, which are expressed in late two-cell stage preimplantation embryos and in 1-5% of the embryonic stem (ES) cell population at a given time. Due to the highly identical nucleotide sequences of multiple copies of Zscan4 paralogs and pseudogenes in the mouse Zscan4 genomic cluster, previous analyses have been done using exogenous transgenes under the regulation of Zscan4c promoter. In this manuscript, we generated knock-in mouse ES cell lines and mouse lines, in which the expression of endogenous Zscan4c, one of the Zscan4 genes, can be specifically monitored with a green fluorescent protein variant, Emerald. Interestingly, we found that only similar to 30% of Zscan4-immunopositive ES cells were Emerald positive, suggesting that even when the Zscan4 locus is active, not all Zscan4 genes are expressed synchronously. We also carried out mass spectrometry of protein complexes associated with endogenous Zscan4 proteins. Taken together, our genetic engineering at an endogenous Zscan4c gene provides the first clue for the expression and function of each gene copy of Zscan4 locus in a physiological context.

    DOI: 10.1007/s11626-016-0097-y

    Web of Science

    researchmap

  • Zscan4 is expressed specifically during late meiotic prophase in both spermatogenesis and oogenesis 査読

    Kei-ichiro Ishiguro, Manuela Monti, Tomohiko Akiyama, Hiromi Kimura, Nana Chikazawa-Nohtomi, Miki Sakota, Saeko Sato, Carlo Alberto Redi, Shigeru B. H. Ko, Minoru S. H. Ko

    IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL   53 ( 2 )   167 - 178   2017年2月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER  

    Mouse zinc finger and SCAN domain containing 4 (Zscan4) proteins, which are encoded by multiple copies of Zscan4 genes, are expressed specifically in preimplantation embryos in vivo and embryonic stem (ES) cells in vitro. However, the expression patterns of mouse Zscan4 in vivo have been largely elusive. Here, we show that Zscan4 proteins are expressed in adult ovaries and testes. In ovaries, Zscan4 proteins were detected in germinal vesicle (GV) stage oocytes in antral follicles, indicating that Zscan4 genes are activated during the diplotene/dictyate stage in meiotic prophase I. Remarkably, Zscan4 showed different spatial localization patterns between two distinct GV oocytes, which can be distinguished by global chromatin organization-surrounded nucleolus (SN) and non-surrounded nucleolus (NSN). These spatiotemporal differences in Zscan4 localizations correlated with the transition of RNA polymerase II-mediated transcriptional status during GV oocyte maturation. In testes, Zscan4 proteins were detected in spermatocytes at late pachytene/diplotene stages and in Sertoli cells. These results suggest that Zscan4 may play critical roles during late meiotic prophase in both males and females.

    DOI: 10.1007/s11626-016-0096-z

    Web of Science

    researchmap

  • Rapid differentiation of human pluripotent stem cells into functional neurons by mRNAs encoding transcription factors 査読

    Sravan Kumar Goparaju, Kazuhisa Kohda, Keiji Ibata, Atsumi Soma, Yukhi Nakatake, Tomohiko Akiyama, Shunichi Wakabayashi, Misako Matsushita, Miki Sakota, Hiromi Kimura, Michisuke Yuzaki, Shigeru B. H. Ko, Minoru S. H. Ko

    SCIENTIFIC REPORTS   7   2017年2月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE PUBLISHING GROUP  

    Efficient differentiation of human pluripotent stem cells (hPSCs) into neurons is paramount for disease modeling, drug screening, and cell transplantation therapy in regenerative medicine. In this manuscript, we report the capability of five transcription factors (TFs) toward this aim: NEUROG1, NEUROG2, NEUROG3, NEUROD1, and NEUROD2. In contrast to previous methods that have shortcomings in their speed and efficiency, a cocktail of these TFs as synthetic mRNAs can differentiate hPSCs into neurons in 7 days, judged by calcium imaging and electrophysiology. They exhibit motor neuron phenotypes based on immunostaining. These results indicate the establishment of a novel method for rapid, efficient, and footprint-free differentiation of functional neurons from hPSCs.

    DOI: 10.1038/srep42367

    Web of Science

    researchmap

  • Identification of transcription factors that promote the differentiation of human pluripotent stem cells into lacrimal gland epithelium-like cells 査読 国際誌

    Hirayama Masatoshi, Ko Shigeru B. H, Kawakita Tetsuya, Akiyama Tomohiko, Goparaju Sravan K, Soma Atsumi, Nakatake Yuhki, Sakota Miki, Chikazawa-Nohtomi Nana, Shimmura Shigeto, Tsubota Kazuo, Ko Minoru S. H

    NPJ AGING AND MECHANISMS OF DISEASE   3   1 - 1   2017年1月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1038/s41514-016-0001-8

    Web of Science

    PubMed

    researchmap

  • Epigenetic Manipulation Facilitates the Generation of Skeletal Muscle Cells from Pluripotent Stem Cells 査読

    Tomohiko Akiyama, Shunichi Wakabayashi, Atsumi Soma, Saeko Sato, Yuhki Nakatake, Mayumi Oda, Miyako Murakami, Miki Sakota, Nana Chikazawa-Nohtomi, Shigeru B. H. Ko, Minoru S. H. Ko

    STEM CELLS INTERNATIONAL   2017年

     詳細を見る

    担当区分:筆頭著者, 責任著者   記述言語:英語   出版者・発行元:HINDAWI LTD  

    Human pluripotent stem cells (hPSCs) have the capacity to differentiate into essentially all cell types in the body. Such differentiation can be directed to specific cell types by appropriate cell culture conditions or overexpressing lineage-defining transcription factors (TFs). Especially, for the activation of myogenic program, early studies have shown the effectiveness of enforced expression of TFs associated with myogenic differentiation, such as PAX7 and MYOD1. However, the efficiency of direct differentiation was rather low, most likely due to chromatin features unique to hPSCs, which hinder the access of TFs to genes involved in muscle differentiation. Indeed, recent studies have demonstrated that ectopic expression of epigenetic-modifying factors such as a histone demethylase and an ATP-dependent remodeling factor significantly enhances myogenic differentiation from hPSCs. In this article, we review the recent progress for in vitro generation of skeletal muscles from hPSCs through forced epigenetic and transcriptional manipulation.

    DOI: 10.1155/2017/7215010

    Web of Science

    researchmap

  • Transient ectopic expression of the histone demethylase JMJD3 accelerates the differentiation of human pluripotent stem cellsle 査読

    Tomohiko Akiyama, Shunichi Wakabayashi, Atsumi Soma, Saeko Sato, Yuhki Nakatake, Mayumi Oda, Miyako Murakami, Miki Sakota, Nana Chikazawa-Nohtomi, Shigeru B. H. Ko, Minoru S. H. Ko

    DEVELOPMENT   143 ( 20 )   3674 - 3685   2016年10月

     詳細を見る

    担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:COMPANY OF BIOLOGISTS LTD  

    Harnessing epigenetic regulation is crucial for the efficient and proper differentiation of pluripotent stem cells (PSCs) into desired cell types. Histone H3 lysine 27 trimethylation (H3K27me3) functions as a barrier against cell differentiation through the suppression of developmental gene expression in PSCs. Here, we have generated human PSC (hPSC) lines in which genome-wide reduction of H3K27me3 can be induced by ectopic expression of the catalytic domain of the histone demethylase JMJD3 (called JMJD3c). We found that transient, forced demethylation of H3K27me3 alone triggers the upregulation of mesoendodermal genes, even when the culture conditions for the hPSCs are not changed. Furthermore, transient and forced expression of JMJD3c followed by the forced expression of lineage-defining transcription factors enabled the hPSCs to activate tissue-specific genes directly. We have also shown that the introduction of JMJD3c facilitates the differentiation of hPSCs into functional hepatic cells and skeletal muscle cells. These results suggest the utility of the direct manipulation of epigenomes for generating desired cell types from hPSCs for cell transplantation therapy and platforms for drug screenings.

    DOI: 10.1242/dev.139360

    Web of Science

    researchmap

  • Transient bursts of Zscan4 expression are accompanied by the rapid derepression of heterochromatin in mouse embryonic stem cells 査読

    Tomohiko Akiyama, Li Xin, Mayumi Oda, Alexei A. Sharov, Misa Amano, Yulan Piao, J. Scotty Cadet, Dawood B. Dudekula, Yong Qian, Weidong Wang, Shigeru B. H. Ko, Minoru S. H. Ko

    DNA RESEARCH   22 ( 5 )   307 - 318   2015年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Mouse embryonic stem cells (mESCs) have a remarkable capacity to maintain normal genome stability and karyotype in culture. We previously showed that infrequent bursts of Zscan4 expression (Z4 events) are important for the maintenance of telomere length and genome stability in mESCs. However, the molecular details of Z4 events remain unclear. Here we show that Z4 events involve unexpected transcriptional derepression in heterochromatin regions that usually remain silent. During a Z4 event, we see rapid derepression and rerepression of heterochromatin leading to a burst of transcription that coincides with transient histone hyperacetylation and DNA demethylation, clustering of pericentromeric heterochromatin around the nucleolus, and accumulation of activating and repressive chromatin remodelling complexes. This heterochromatin-based transcriptional activity suggests that mESCs may maintain their extraordinary genome stability at least in part by transiently resetting their heterochromatin.

    DOI: 10.1093/dnares/dsv013

    Web of Science

    researchmap

  • Maternal TET3 is dispensable for embryonic development but is required for neonatal growth 査読

    Yu-ichi Tsukada, Tomohiko Akiyama, Keiichi I. Nakayama

    SCIENTIFIC REPORTS   5   2015年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE PUBLISHING GROUP  

    The development of multicellular organisms is accompanied by reprogramming of the epigenome in specific cells, with the epigenome of most cell types becoming fixed after differentiation. Genome-wide reprogramming of DNA methylation occurs in primordial germ cells and in fertilized eggs during mammalian embryogenesis. The 5-methylcytosine (5mC) content of DNA thus undergoes a marked decrease in the paternal pronucleus of mammalian zygotes. This loss of DNA methylation has been thought to be mediated by an active demethylation mechanism independent of replication and to be required for development. TET3-mediated sequential oxidation of 5mC has recently been shown to contribute to the genome-wide loss of 5mC in the paternal pronucleus of mouse zygotes. We now show that TET3 localizes not only to the paternal pronucleus but also to the maternal pronucleus and oxidizes both paternal and maternal DNA in mouse zygotes, although these phenomena are less pronounced in the female pronucleus. Genetic ablation of TET3 in oocytes had no significant effect on oocyte development, maturation, or fertilization or on pregnancy, but it resulted in neonatal sublethality. Our results thus indicate that zygotic 5mC oxidation mediated by maternal TET3 is required for neonatal growth but is not essential for development.

    DOI: 10.1038/srep15876

    Web of Science

    researchmap

  • Genome-Wide Analysis of the Chromatin Composition of Histone H2A and H3 Variants in Mouse Embryonic Stem Cells 査読

    Masashi Yukawa, Tomohiko Akiyama, Vedran Franke, Nathan Mise, Takayuki Isagawa, Yutaka Suzuki, Masataka G. Suzuki, Kristian Vlahovicek, Kuniya Abe, Hiroyuki Aburatani, Fugaku Aoki

    PLOS ONE   9 ( 3 )   2014年3月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PUBLIC LIBRARY SCIENCE  

    Genome-wide distribution of the majority of H2A and H3 variants (H2A, H2AX, H2AZ, macroH2A, H3.1, H3.2 and H3.3) was simultaneously investigated in mouse embryonic stem cells by chromatin immunoprecipitation sequencing. Around the transcription start site, histone variant distribution differed between genes possessing promoters of high and low CpG density, regardless of their expression levels. In the intergenic regions, regulatory elements were enriched in H2A.Z and H3.3, whereas repeat elements were abundant in H2A and macroH2A, and H3.1, respectively. Analysis of H2A and H3 variant combinations composing nucleosomes revealed that the H2A.Z and H3.3 combinations were present at a higher frequency throughout the genome than the other combinations, suggesting that H2A. Z and H3.3 associate preferentially with each other to comprise the nucleosomes independently of genome region. Finally, we found that chromatin was unstable only in regions where it was enriched in both H2A.Z and H3.3, but strongly quantified stable in regions in which only H3.3 was abundant. Therefore, histone variant composition is an important determinant of chromatin structure, which is associated with specific genomic functions.

    DOI: 10.1371/journal.pone.0092689

    Web of Science

    researchmap

  • Zscan4 restores the developmental potency of embryonic stem cells 査読

    Tomokazu Amano, Tetsuya Hirata, Geppino Falco, Manuela Monti, Lioudmila V. Sharova, Misa Amano, Sarah Sheer, Hien G. Hoang, Yulan Piao, Carole A. Stagg, Kohei Yamamizu, Tomohiko Akiyama, Minoru S. H. Ko

    NATURE COMMUNICATIONS   4   2013年6月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE PUBLISHING GROUP  

    The developmental potency of mouse embryonic stem (ES) cells, which is the ability to contribute to a whole embryo, is known to deteriorate during long-term cell culture. Previously, we have shown that ES cells oscillate between Zscan4(-) and Zscan4(+) states, and the transient activation of Zscan4 is required for the maintenance of telomeres and genome stability of ES cells. Here we show that increasing the frequency of Zscan4 activation in mouse ES cells restores and maintains their developmental potency in long-term cell culture. Injection of a single ES cell with such increased potency into a tetraploid blastocyst gives rise to an entire embryo with a higher success rate. These results not only provide a means to rejuvenate ES cells by manipulating Zscan4 expression, but also indicate the active roles of Zscan4 in the long-term maintenance of ES cell potency.

    DOI: 10.1038/ncomms2966

    Web of Science

    researchmap

  • The Expression and Nuclear Deposition of Histone H3.1 in Murine Oocytes and Preimplantation Embryos 査読

    Machika Kawamura, Tomohiko Akiyama, Satoshi Tsukamoto, Masataka G. Suzuki, Fugaku Aoki

    JOURNAL OF REPRODUCTION AND DEVELOPMENT   58 ( 5 )   557 - 562   2012年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SOCIETY REPRODUCTION & DEVELOPMENT-SRD  

    Differentiated oocytes acquire totipotency through fertilization. During this transition, genome-wide chromatin remodeling occurs, which leads to change in gene expression. However, the mechanism that underlies this global change in chromatin structure has not been fully elucidated. Histone variants play a key role in defining chromatin structure and are implicated in inheritance of epigenetic information. In this study, we analyzed the nuclear localization and expression of H3.1 to elucidate the role of this histone variant in chromatin remodeling during oogenesis and preimplantation development. Analysis using Flag-tagged H3.1 transgenic mice revealed that Flag-H3.1 was not present in differentiated oocytes or early preimplantation embryos before the morula stage, although Flag-H3.1 mRNA was expressed at all stages examined. In addition, the expression levels of endogenous H3.1 genes were low at the stages where H3.1 was not present in chromatin. These results suggest that H3.1 is not incorporated into chromatin due to the inactivity of the histone chaperone and low mRNA expression level. The significance of the dynamics of H3.1 is evaluated in terms of chromatin remodeling that takes place during development.

    DOI: 10.1262/jrd.2012-074

    Web of Science

    researchmap

  • Dramatic replacement of histone variants during genome remodeling in nuclear-transferred embryos 査読

    Buhe Nashun, Tomohiko Akiyama, Masataka G. Suzuki, Fugaku Aoki

    EPIGENETICS   6 ( 12 )   1489 - 1497   2011年12月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:LANDES BIOSCIENCE  

    The genome of differentiated somatic nuclei is remodeled to a totipotent state when they are transplanted into enucleated oocytes. To clarify the mechanism of this genome remodeling, we analyzed changes in the composition of core histone variants in nuclear-transferred embryos, since recent evidence has revealed that chromatin structure can be remodeled as a result of variant histone replacement. We found that the donor cell-derived histone H3 variants H3.1, H3.2 and H3.3, as well as H2A and H2A.Z, were rapidly eliminated from the chromatin of nuclei transplanted into enucleated oocytes. Accompanying this removal, oocyte-stored histone H3 variants and H2A. X were incorporated into the transplanted nuclei, while the incorporation of H2A and H2A.Z was minimal or not detected. The incorporation of these variant histones was DNA replication-independent. These results suggest that most core histone H2A and H3 components are dynamically exchanged between donor nuclei and recipient cytoplasm, which further suggests that replacement of donor cell histones with oocyte-stored histones may play a key role in genome remodeling in nuclear-transferred embryos. In addition, the incorporation patterns of all of the histone variants in the nuclear-transferred embryos were virtually the same as in the fertilized embryos. Only the incorporation pattern of H3.1 differed; it was incorporated into the transplanted donor nuclei, but not in the pronuclei of fertilized embryos. This result suggests that the incorporation of H3.1 has a detrimental effect on the process of genome remodeling and contributes to the low success rate of somatic nuclear cloning.

    DOI: 10.4161/epi.6.12.18206

    Web of Science

    researchmap

  • Dynamic Replacement of Histone H3 Variants Reprograms Epigenetic Marks in Early Mouse Embryos 査読

    Tomohiko Akiyama, Osamu Suzuki, Junichiro Matsuda, Fugaku Aoki

    PLOS GENETICS   7 ( 10 )   2011年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PUBLIC LIBRARY SCIENCE  

    Upon fertilization, reprogramming of gene expression is required for embryo development. This step is marked by DNA demethylation and changes in histone variant composition. However, little is known about the molecular mechanisms causing these changes and their impact on histone modifications. We examined the global deposition of the DNA replication-dependent histone H3.1 and H3.2 variants and the DNA replication-independent H3.3 variant after fertilization in mice. We showed that H3.3, a euchromatic marker of gene activity, transiently disappears from the maternal genome, suggesting erasure of the oocyte-specific modifications carried by H3.3. After fertilization, H3.2 is incorporated into the transcriptionally silent heterochromatin, whereas H3.1 and H3.3 occupy unusual heterochromatic and euchromatin locations, respectively. After the two-cell stage, H3.1 and H3.3 variants resume their usual respective locations on heterochromatin and euchromatin. Preventing the incorporation of H3.1 and H3.2 by knockdown of the histone chaperone CAF-1 induces a reciprocal increase in H3.3 deposition and impairs heterochromatin formation. We propose that the deposition of different H3 variants influences the functional organization of chromatin. Taken together, these findings suggest that dynamic changes in the deposition of H3 variants are critical for chromatin reorganization during epigenetic reprogramming.

    DOI: 10.1371/journal.pgen.1002279

    Web of Science

    researchmap

  • Changes in the nuclear deposition of histone H2A variants during pre-implantation development in mice 査読

    Buhe Nashun, Masashi Yukawa, Honglin Liu, Tomohiko Akiyama, Fugaku Aoki

    DEVELOPMENT   137 ( 22 )   3785 - 3794   2010年11月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:COMPANY OF BIOLOGISTS LTD  

    Histone H2A has several variants, and changes in chromatin composition associated with their replacement might involve chromatin structure remodeling. We examined the dynamics of the canonical histone H2A and its three variants, H2A.X, H2A.Z and macroH2A, in the mouse during oogenesis and pre-implantation development when genome remodeling occurs. Immunocytochemistry with specific antibodies revealed that, although H2A and all variants were deposited in the nuclei of full-grown oocytes, only histone H2A.X was abundant in the pronuclei of one-cell embryos after fertilization, in contrast with the low abundance of histone H2A and the absence of H2A.Z. The decline in H2A and the depletion of H2A.Z and macroH2A after fertilization were confirmed using Flag epitope-tagged H2A, H2A.Z and macroH2A transgenic mouse lines. Microinjection experiments with mRNA encoding the Flag-tagged proteins revealed a similar pattern of nuclear incorporation of the H2A variants. Fusion protein experiments using H2A, H2A.Z and macroH2A fused with the C-terminal 23 amino acids of H2A.X showed that the C-terminal amino acids of H2A.X function specifically to target this variant histone into chromatin in embryos after fertilization and that the absence of H2A.Z and macroH2A from the chromatin is required for normal development. These results suggest that global changes in the composition of histone H2A variants in chromatin play a role in genome remodeling after fertilization.

    DOI: 10.1242/dev.051805

    Web of Science

    researchmap

  • Changes in H3K79 methylation during preimplantation development in mice 査読

    Masatoshi Ooga, Azusa Inoue, Shun-ichiro Kageyama, Tomohiko Akiyama, Masao Nagata, Fugaku Aoki

    BIOLOGY OF REPRODUCTION   78 ( 3 )   413 - 424   2008年3月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SOC STUDY REPRODUCTION  

    The gene expression pattern of differentiated oocytes is reprogrammed into that of totipotent preimplantation embryos before and/or after fertilization. To elucidate the mechanisms of genome reprogramming, we investigated histone H3 lysine 79 dimethylation (H3K79me2) and trimethylation (H3K79me3) in oocytes and preimplantation embryos via immunocytochemistry. In somatic cells and oocytes, H3K79me2 was observed throughout the genome, whereas H3K79me3 was localized in the pericentromeric heterochromatin regions in which there are no active genes. Because H3K79me2 is considered an active gene marker, H3K79 methylation seems to have differing functions depending on the number of methyl groups added on the same residues. Both H3K79me2 and H3K79me3 decreased soon after fertilization, and the hypomethylated state was maintained at interphase (before the blastocyst stage), except for a transient increase in H3K79me2 at mitosis (M phase). H3K79me3 was not detected throughout preimplantation, even at M phase. To investigate the involvement of H3K79me2 in genome reprogramming, somatic nuclei were transplanted into enucleated oocytes. H3K79me2 in these nuclei was demethylated following parthenogenetic activation. However, the nuclei that had been transplanted into the parthenogenetic embryos 7 h after activation were not demethylated. This suggests that the elimination of H3K79 methylation after fertilization is involved in genomic reprogramming.

    DOI: 10.1095/biolreprod.107.063453

    Web of Science

    researchmap

  • Dynamics of histone H3 variant deposition during oogenesis and preimplantation development 査読

    Tomohiko Akiyama, Masao Nagata, Fugaku Aoki

    BIOLOGY OF REPRODUCTION   306 - 307   2008年

     詳細を見る

    記述言語:英語   出版者・発行元:SOC STUDY REPRODUCTION  

    Web of Science

    researchmap

  • [Involvement of histone modification and histone variants replacement in genome reprogramming during oogenesis and preimplantation development].

    Fugaku Aoki, Tomohiko Akiyama

    Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   52 ( 16 Suppl )   2170 - 6   2007年12月

     詳細を見る

    記述言語:日本語   掲載種別:研究論文(学術雑誌)  

    PubMed

    researchmap

  • Changes in histone modification upon activation of dormant mouse blastocysts 査読

    Tamako Matsuhashi, Tomohiko Akiyama, Fugaku Aoki, Senkiti Sakai

    ANIMAL SCIENCE JOURNAL   78 ( 6 )   575 - 586   2007年12月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BLACKWELL PUBLISHING  

    Gene expression in the implanting blastocyst is altered by stimulation with estrogen secreted from maternal ovaries. In the present study, to understand the mechanism regulating the changes in gene expression, diverse histone modifications in blastocysts were studied using a delayed implantation model, in which embryos were kept in a dormant state in the uterus by maternal ovariectomy and progesterone treatment, and then activated by injection with estrogen. Total transcriptional activity increased markedly in activated embryos, and immunocytochemistry with antibodies recognizing specific histone modifications revealed differential modification of several histones in the trophectoderm (TE) and inner cell mass (ICM) of dormant and activated embryos. High levels of histone H3 lysine 9 (H3K9) dimethylation, which suppresses gene expression, were observed in the ICM, but not in the TE, of dormant embryos, and the levels decreased when the embryos were activated, consistent with changes in transcriptional activity. Substitution of histone H3.3, a variant of H3, for dominant H3.1 increased in activated embryos, suggesting that histone substitution is involved in inducing gene expression associated with activation. In the nucleus, H3.3 was mainly localized in the nucleoli of activated embryos but not in those of dormant ones. In contrast, there were no obvious differences in the trimethylation of histone H3K9 or the acetylation of histones H3K9, H3K18 and H4K12 between dormant and activated embryos. These results suggest that a decrease in H3K9 dimethylation contributes to the acquisition of implantation competence by releasing genes from suppression. In addition, histone H3.3 substitution seems to be involved in global gene activation and facilitates the prompt recovery of dormant blastocysts to the active state by inducing rRNA synthesis, resulting in an increase in translational activity.

    DOI: 10.1111/j.1740-0929.2007.00478.x

    Web of Science

    researchmap

  • The perivitelline space-forming capacity of mouse oocytes is associated with meiotic competence 査読

    Azusa Inoue, Tomohiko Akiyama, Masao Nagata, Fugaku Aoki

    JOURNAL OF REPRODUCTION AND DEVELOPMENT   53 ( 5 )   1043 - 1052   2007年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SOCIETY REPRODUCTION & DEVELOPMENT-SRD  

    Although mouse oocytes progressively acquire meiotic competence during their growth in the ovaries, only half of full-grown oocytes can accomplish meiosis. Two types of full-grown oocytes have been reported on the basis of their chromatin configuration, the surrounded-nucleolus (SN) type and the non-surrounded-nucleolus (NSN) type. Therefore, full-grown oocytes collected from the ovaries of adult animals comprise a heterogeneous population; some oocytes are meiotically incompetent (NSN-type), and some are competent (SN-type). In the present study, we found that full-grown oocytes could be classified into two groups using the criterion of formation of the perivitelline space (PVS) after culture with 3-isobutyl-l-methylxanthine (IBMX) for 1 h. In oocytes with a PVS, actin-filled processes within zona pellucidae originating from cumulus cells were reduced, while they were rich in oocytes without a PVS, suggesting that a reduction in these processes contributes to PVS formation. PVS formation was highly correlated with meiotic competence and SN-type configuration. The results of this study demonstrate that PVS formation is a useful criterion for easily distinguishing between SN- and NSN-type oocytes, without injury to the cells.

    DOI: 10.1262/jrd.19064

    Web of Science

    researchmap

  • Inadequate histone deacetylation during oocyte meiosis causes aneuploidy and embryo death in mice 査読

    T Akiyama, M Nagata, F Aoki

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   103 ( 19 )   7339 - 7344   2006年5月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATL ACAD SCIENCES  

    Errors in meiotic chromosome segregation are the leading cause of spontaneous abortions and birth defects. Almost all such aneuploidy derives from meiotic errors in females, with increasing maternal age representing a major risk factor. It was recently reported that histories are globally deacetylated in mammalian oocytes during meiosis but not mitosis. In the present study, inhibition of meiotic histone deacetylation was found to induce aneuploidy in fertilized mouse oocytes, which resulted in embryonic death in utero at an early stage of development. In addition, a histone remained acetylated in the oocytes of older (10-month-old) female mice, suggesting that the function for histone deacetylation is decreased in the oocytes of such mice. Thus, histone deacetylation may be involved in the fair distribution of chromosomes during meiotic division. The high incidence of aneuploidy in the embryos of older females may be due to inadequate meiotic histone deacetylation.

    DOI: 10.1073/pnas.0510946103

    Web of Science

    PubMed

    researchmap

  • Regulation of histone acetylation during meiotic maturation in mouse oocytes 査読

    T Akiyama, JM Kim, M Nagata, F Aoki

    MOLECULAR REPRODUCTION AND DEVELOPMENT   69 ( 2 )   222 - 227   2004年10月

     詳細を見る

    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:WILEY-LISS  

    Histone acetylation is an important epigenetic modification implicated in the regulation of chromatin structure and, subsequently, gene expression. Global histone deacetylation was reported in mouse oocytes during meiosis but not mitosis. The regulation of this meiosis-specific deacetylation has not been elucidated. Here, we demonstrate that p34(cdc2) kinase activity and protein synthesis are responsible for the activation of histone deacetylases and the inhibition of histone acetyltransferases (HATs), respectively, resulting in deacetylation of histone H4 at lysine12 (H4K12) during mouse oocyte meiosis. Temporal changes in the acetylation state of H4K12 were examined immunocytochemically during meiotic maturation using an antibody specific for acetylated H4K12. H4K12 was deacetylated during the first meiosis, temporarily acetylated around the time of the first polar body (PBl) extrusion, and then deacetylated again during the second meiosis. Because these changes coincided with the known oscillation pattern of p34(cdc2) kinase activity, we investigated the involvement of the kinase in H4K12 deacetylation. Roscovitine, an inhibitor of cyclin-dependent kinase activity, prevented H4K12 deacetylation during both the first and second meiosis, suggesting that p34(cdc2) kinase activity is required for deacetylation during meiosis. In addition, cycloheximide, a protein synthesis inhibitor, also prevented deacetylation. After PB1 extrusion, at which time H4K12 had been deacetylated, H4K12 was re-acetylated in the condensed chromosomes by treatment with cycloheximide but not with roscovitine. These results demonstrate that HATs are present but inactivated by newly synthesized protein(s) that is (are) not involved in p34(cdc2) kinase activity. Our results suggest that p34(cdc2) kinase activity induces the deacetylation of H4K12 and that the deacetylated state is maintained by newly synthesized protein(s) that inhibits HAT activity during meiosis. (C) 2004 Wiley-Liss, Inc.

    DOI: 10.1002/mrd.20121

    Web of Science

    PubMed

    researchmap

▼全件表示

MISC

  • 【理研バイオリソース研究センター20年の歩み】遺伝子リソースの利用者から 遺伝子リソースの利用から細胞の寄託へ ヒト転写因子の網羅的解析を可能にするバイオリソース

    秋山 智彦, 中武 悠樹, 洪 繁, 小原 收, 的場 亮, 阿久津 英憲, 西村 邦裕, 洪 実

    遺伝: 生物の科学   75 ( 6 )   552 - 559   2021年11月

     詳細を見る

    記述言語:日本語   出版者・発行元:(株)エヌ・ティー・エス  

    researchmap

  • Zscan4と多能性幹細胞,着床前胚,生殖細胞におけるゲノム維持機構

    洪実, 秋山智彦, 石黒啓一郎, 洪繁, 近澤(納富)奈々, 中武悠樹, 佐藤紗恵子

    日本分子生物学会年会プログラム・要旨集(Web)   42nd   2019年

     詳細を見る

  • 転写因子をコードする修飾合成mRNAを用いた腎前駆細胞及び腎オルガノイドへの分化誘導法の開発

    平塚健, 門川俊明, 秋山智彦, 中武悠樹, ゴパラジュスラバン, 小田真由美, 木村寛美, 納富奈々, 佐藤紗恵子, 山口慎太郎, 森實隆司, 洪繁, 洪実, 伊藤裕

    日本腎臓学会誌   60 ( 3 )   359 - 359   2018年4月

     詳細を見る

    記述言語:日本語   出版者・発行元:(一社)日本腎臓学会  

    J-GLOBAL

    researchmap

  • 転写因子をコードする修飾合成mRNAを用いた腎前駆細胞及び腎オルガノイドへの分化誘導法の開発

    平塚 健, 門川 俊明, 秋山 智彦, 中武 悠樹, ゴパラジュ・スラバン, 小田 真由美, 木村 寛美, 納富 奈々, 佐藤 紗恵子, 山口 慎太郎, 森實 隆司, 洪 繁, 洪 実, 伊藤 裕

    日本腎臓学会誌   60 ( 3 )   359 - 359   2018年4月

     詳細を見る

    記述言語:日本語   出版者・発行元:(一社)日本腎臓学会  

    researchmap

  • マスター転写因子とヒストン脱メチル化酵素の関連性

    秋山智彦

    日本分子生物学会年会プログラム・要旨集(Web)   41st   2018年

     詳細を見る

  • Quick‐Tissueテクノロジー:ヒト転写因子合成mRNAを用いたヒト多能性幹細胞の新しい細胞分化誘導法とその将来展望

    洪繁, 秋山智彦, GOPARAJU Sravan, 平山雅敏, 洪実

    Bio Industry   34 ( 8 )   18‐28   2017年8月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • ヒトES細胞‐骨格筋変換に関わるaccessible chromatin構造

    秋山智彦, 湯川将史, SHAROV Alexei, QIAN Yong, 中武悠樹, 若林俊一, BARSKI Artem, 洪実

    エピゲノムはどこまで操れるようになったか 第11回日本エピジェネティクス研究会年会プログラム集 理研シンポジウム 平成29年   70   2017年

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • 合成RNA導入による骨格筋分化誘導法の確立

    秋山智彦, 佐藤紗恵子, 納富奈々, 相馬淳美, 木村寛美, 洪繁, 洪実

    再生医療   16   2017年

     詳細を見る

  • Epigenetic Manipulation Facilitates the Generation of Skeletal Muscle Cells from Pluripotent Stem Cells

    Tomohiko Akiyama, Shunichi Wakabayashi, Atsumi Soma, Saeko Sato, Yuhki Nakatake, Mayumi Oda, Miyako Murakami, Miki Sakota, Nana Chikazawa-Nohtomi, Shigeru B. H. Ko, Minoru S. H. Ko

    Stem Cells International   2017   2017年

     詳細を見る

    記述言語:英語   掲載種別:書評論文,書評,文献紹介等   出版者・発行元:Hindawi Limited  

    Human pluripotent stem cells (hPSCs) have the capacity to differentiate into essentially all cell types in the body. Such differentiation can be directed to specific cell types by appropriate cell culture conditions or overexpressing lineage-defining transcription factors (TFs). Especially, for the activation of myogenic program, early studies have shown the effectiveness of enforced expression of TFs associated with myogenic differentiation, such as PAX7 and MYOD1. However, the efficiency of direct differentiation was rather low, most likely due to chromatin features unique to hPSCs, which hinder the access of TFs to genes involved in muscle differentiation. Indeed, recent studies have demonstrated that ectopic expression of epigenetic-modifying factors such as a histone demethylase and an ATP-dependent remodeling factor significantly enhances myogenic differentiation from hPSCs. In this article, we review the recent progress for in vitro generation of skeletal muscles from hPSCs through forced epigenetic and transcriptional manipulation.

    DOI: 10.1155/2017/7215010

    Scopus

    researchmap

  • ヒト多能性幹細胞の分化運命を決定する転写因子の網羅的同定と細胞分化制御技術の開発

    中武悠樹, 納富奈々, 村上都湖, 大倉千明, 迫田実希, 合田徳夫, 若林俊一, MAK Siu San, MARTIN Jakt, 松下美紗子, 秋山智彦, 相馬淳美, 伊東紀子, 小田真由美, 洪繁, 西村邦裕, 的場亮, 阿久津英憲, 小原収, 洪実

    再生医療   15   287   2016年2月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • 転写因子を用いたヒトES細胞から神経細胞への分化誘導法

    松下美紗子, 中武悠樹, KUMAR GOPARAJU, Sravan, 若林俊一, 秋山智彦, 相馬淳美, 納富奈々, 迫田実希, 村上都湖, 大倉千明, 平塚健, 井端啓二, 幸田和久, 柚崎通介, 金井隆典, 洪繁, 洪実

    再生医療   15   220   2016年2月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • ヒストン脱メチル化酵素はヒト多能性幹細胞の分化抵抗性を減弱することにより細胞分化を促進する

    秋山智彦, 洪繁, GOPARAJU Sravan, 相馬淳美, 佐藤紗恵子, 若林俊一, 中武悠樹, 小田真由美, 納冨奈々, 迫田実希, 村上都湖, 洪実

    再生医療   15   234   2016年2月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • ヒト多能性幹細胞から腎尿細管様細胞への分化誘導法の開発

    平塚健, 門川俊明, 秋山智彦, 中武悠樹, SRAVAN Kumar Goparaju, 相馬淳美, 佐藤紗恵子, 納富奈々, 木村寛美, 山口慎太郎, 森實隆司, 鈴木さゆり, 松下美紗子, 平山雅敏, 洪繁, 伊藤裕, 洪実

    再生医療   15   216   2016年2月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • JMJD3のJmjCドメイン導入によるヒト多能性幹細胞の骨格筋および肝細胞への分化誘導促進

    秋山智彦, 洪実

    日本分子生物学会年会プログラム・要旨集(Web)   39th   ROMBUNNO.2AS9‐4(3P‐0516) (WEB ONLY)   2016年

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • 短時間のZscan4強発現状態は、瞬間的なクロマチン・リセットを介してマウスES細胞のゲノム安定化に寄与する

    秋山 智彦, 小田 真由美, Sharov Alexei A, 洪 繁, 洪 実

    日本生化学会大会・日本分子生物学会年会合同大会講演要旨集   88回・38回   [3P0629] - [3P0629]   2015年12月

     詳細を見る

    記述言語:日本語   出版者・発行元:(公社)日本生化学会  

    researchmap

  • 【染色体研究Update】 Zscan4による特異的なヘテロクロマチン制御を介したマウスES細胞のゲノム安定化

    秋山 智彦, 小田 真由美, 石黒 啓一郎, 洪 繁, 洪 実

    細胞工学   34 ( 11 )   1052 - 1056   2015年10月

     詳細を見る

    記述言語:日本語   出版者・発行元:(株)学研メディカル秀潤社  

    researchmap

  • 【再生医療-新たな医療を求めて-】 臨床応用を目指した基礎研究 再生医療を進めるための技術開発 転写因子操作による多能性幹細胞からの自在な細胞分化誘導技術の確立を目指して

    秋山 智彦, 中武 悠樹, 山水 康平, 相馬 淳美, 洪 繁, 洪 実

    日本臨床   73 ( 増刊5 再生医療 )   330 - 336   2015年6月

     詳細を見る

    記述言語:日本語   出版者・発行元:(株)日本臨床社  

    researchmap

  • ES細胞のゲノム安定化にかかわるエピゲノム機構

    秋山智彦, SHAROV Alexei, 小田真由美, 洪繁, 洪実

    再生医療   14   288   2015年2月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • 短時間のZscan4強発現状態は,瞬間的なクロマチン・リセットを介してマウスES細胞のゲノム安定化に寄与する

    秋山智彦, 秋山智彦, 小田真由美, SHAROV Alexei A, 洪繁, 洪実, 洪実

    日本生化学会大会(Web)   88th   3P0629 (WEB ONLY)   2015年

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • マウスES細胞の染色体安定性を制御するエピゲノム機構

    秋山智彦, 小田真由美, 石黒 啓一郎, 洪繁, 洪実

    細胞工学   34 ( 11 )   1052 - 1056   2015年

     詳細を見る

  • 【生殖細胞-全能性を獲得し、世代を紡ぐサイクル】 着床前期胚、生殖細胞、幹細胞にかかわるZSCAN4

    秋山 智彦, 洪 繁, 洪 実

    実験医学   32 ( 6 )   870 - 876   2014年4月

     詳細を見る

    記述言語:日本語   出版者・発行元:(株)羊土社  

    researchmap

  • ヒストンの多様性とクロマチン機能制御機構 マウスES細胞におけるヒストンH2AおよびH3変異体のゲノムワイド解析

    青木 不学, 湯川 将之, 秋山 智彦, 油谷 浩幸, 阿部 訓也

    日本生化学会大会プログラム・講演要旨集   85回   2S06 - 3   2012年12月

     詳細を見る

    記述言語:日本語   出版者・発行元:(公社)日本生化学会  

    researchmap

  • 発生過程におけるゲノムリモデリングへのH3変異体の関与について

    河村真愛, 秋山智彦, 塚本智史, 青木不学

    日本畜産学会大会講演要旨   115th   207   2012年3月

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • マウスES細胞におけるヒストンH2AおよびH3変異体のゲノムワイド解析

    青木不学, 湯川将之, 秋山智彦, 油谷浩幸, 阿部訓也

    日本生化学会大会(Web)   85th   2S06-3 (WEB ONLY)   2012年

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • マウスES細胞におけるヒストンH2A,H3変異体のゲノムワイド解析

    湯川将之, 秋山智彦, 油谷浩幸, 鈴木穣, 阿部訓也, 青木不学

    日本分子生物学会年会プログラム・要旨集(Web)   35th   4P-0145 (WEB ONLY)   2012年

     詳細を見る

    記述言語:日本語  

    J-GLOBAL

    researchmap

  • 核移植胚におけるコアヒストン置換によるクロマチンの再構築

    秋山 智彦, 那順布和, 青木 不学

    Journal of Mammalian Ova Research   28 ( 2 )   S72 - S72   2011年4月

     詳細を見る

    記述言語:日本語   出版者・発行元:(一社)日本卵子学会  

    CiNii Books

    researchmap

  • 【生殖細胞の発生・エピジェネティクスと再プログラム化】 エピジェネティクス 卵形成・初期発生過程におけるゲノム再プログラム化とヒストン修飾・ヒストン変異体置換

    青木 不学, 秋山 智彦

    蛋白質・核酸・酵素   52 ( 16 )   2170 - 2176   2007年12月

     詳細を見る

    記述言語:日本語   出版者・発行元:共立出版(株)  

    CiNii Books

    researchmap

    その他リンク: http://search.jamas.or.jp/link/ui/2008108300

  • 減数分裂期の染色体分配とクロマチン修飾

    秋山 智彦, 青木 不学

    細胞工学   25 ( 9 )   1064 - 1067   2006年8月

     詳細を見る

    記述言語:日本語   出版者・発行元:(株)学研メディカル秀潤社  

    researchmap

  • Histone H3 Variants in Mouse Preimplantation Embryos

    T. Akiyama, M. Nagata, F. Aoki

    MOLECULAR BIOLOGY OF THE CELL   17   2006年

     詳細を見る

    記述言語:英語   掲載種別:研究発表ペーパー・要旨(国際会議)   出版者・発行元:AMER SOC CELL BIOLOGY  

    Web of Science

    researchmap

  • Genome reprogramming involves erasing cell memory during meiosis.

    T Akiyama, HL Liu, JM Kim, M Nagata, F Aoki

    BIOLOGY OF REPRODUCTION   147 - 147   2005年

     詳細を見る

    記述言語:英語   掲載種別:研究発表ペーパー・要旨(国際会議)   出版者・発行元:SOC STUDY REPRODUCTION  

    Web of Science

    researchmap

  • 減数分裂期におけるヒストンアセチル化の制御機構の解析

    秋山 智彦, 永田 昌男, 青木 不学

    Journal of mammalian ova research = 日本哺乳動物卵子学会誌   21 ( 2 )   S20   2004年4月

     詳細を見る

    記述言語:日本語  

    DOI: 10.1002/mrd.20121

    CiNii Books

    researchmap

▼全件表示

講演・口頭発表等

  • 転写因子導入によるヒト多能性幹細胞の分化誘導の自在化を目指して

    秋山智彦

    熊本大学発生研セミナー(招待講演)  2017年12月 

     詳細を見る

  • 転写因子およびクロマチン制御因子による分化誘導の自在化を目指して

    秋山智彦

    分子生物学会フォーラム(招待講演)  2017年12月 

     詳細を見る

  • 合成 RNA による骨格筋分化誘導法の確立

    秋山智彦

    骨格筋領域カンファレンス(招待講演)  2017年2月 

     詳細を見る

  • マウスES細胞のゲノム安定性に寄与するクロマチンリセット機構

    秋山智彦

    理化学研究所バイオリソースセンター(招待講演)  2016年1月 

     詳細を見る

  • Accelerated differentiation of human pluripotent stem cells by ectopic expression of histone demethylase

    秋山智彦

    日本発生生物学会(招待講演)  2017年5月 

     詳細を見る

  • Transcriptome Manipulation to Facilitate the Differentiation of Human Pluripotent Stem Cells

    秋山智彦

    幹細胞シンポジウム(招待講演)  2018年6月 

     詳細を見る

  • ヒトES細胞の直接分化誘導に関わるaccessible chromatin構造

    秋山智彦

    次世代生命科学研究会(招待講演)  2017年7月 

     詳細を見る

▼全件表示

受賞

  • Excellent Doctoral Thesis Award

    2008年3月   東京大学  

    秋山智彦

     詳細を見る

共同研究・競争的資金等の研究課題

  • ES細胞の分化過程において切り替わる転写調節機構の解明

    研究課題/領域番号:22K06090  2022年4月 - 2025年3月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    秋山 智彦

      詳細を見る

    配分額:4030000円 ( 直接経費:3100000円 、 間接経費:930000円 )

    researchmap

  • 多能性を規定するエンハンサーループの維持と再構築機構の解明

    研究課題/領域番号:22H04699  2022年4月 - 2024年3月

    日本学術振興会  科学研究費助成事業 新学術領域研究(研究領域提案型)  新学術領域研究(研究領域提案型)

    秋山 智彦

      詳細を見る

    配分額:8580000円 ( 直接経費:6600000円 、 間接経費:1980000円 )

    researchmap

  • 武田薬品COCKPI-T® Funding

    2021年 - 2022年

    武田薬品株式会社共同研究費  武田薬品株式会社共同研究費

    秋山 智彦

      詳細を見る

    担当区分:研究代表者 

    researchmap

  • 転写装置の性差形成機構の解明

    研究課題/領域番号:20H04929  2020年4月 - 2022年3月

    日本学術振興会  科学研究費助成事業 新学術領域研究(研究領域提案型)  新学術領域研究(研究領域提案型)

    秋山 智彦

      詳細を見る

    配分額:10400000円 ( 直接経費:8000000円 、 間接経費:2400000円 )

    researchmap

  • 幹細胞のエンハンサー機能を支えるクロマチン継承機構

    研究課題/領域番号:20H05395  2020年4月 - 2022年3月

    日本学術振興会  科学研究費助成事業 新学術領域研究(研究領域提案型)  新学術領域研究(研究領域提案型)

    秋山 智彦

      詳細を見る

    配分額:8320000円 ( 直接経費:6400000円 、 間接経費:1920000円 )

    researchmap

  • 分化制御を担う転写プロセスにおけるヒストン脱メチル化酵素の役割

    研究課題/領域番号:19K06492  2019年4月 - 2022年3月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    秋山 智彦

      詳細を見る

    配分額:4420000円 ( 直接経費:3400000円 、 間接経費:1020000円 )

    本研究では、UTXの脱メチル化酵素非依存的な役割が示唆されたため、UTXのホモログであるY染色体にコードされるUTYに着目した。UTYは進化的に酵素活性部位に変異が起こり脱メチル化機能は認められない。UTXとUTYを両方とも欠損させると未分化ES細胞および分化細胞において、遺伝子発現の異常がグローバルにみられた。さらにエンハンサー領域に結合する転写因子の局在が数千か所に渡って変化していることが分かった。これらの結果から、UTXは脱メチル化酵素非依存的に転写因子の配置を制御しており、UTYと協調して分化制御に関わっていることが明らかとなった。

    researchmap

  • COCKPITプラットフォーム開発

    2018年 - 2019年

    武田薬品株式会社共同研究費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • ヒストン脱メチル化酵素の局在を決定する因子の探索

    2018年

    熊本大学発生医研究所共同研究費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • In vitroにおける神経筋接合部のモデル構築

    2018年

    慶應義塾大学医学部坂口光洋記念研究奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • ヒトES細胞の分化過程における転写因子ネットワークの解明と新規分化誘導因子の同定

    研究課題/領域番号:17K15129  2017年4月 - 2019年3月

    日本学術振興会  科学研究費助成事業 若手研究(B)  若手研究(B)

    秋山 智彦

      詳細を見る

    配分額:4420000円 ( 直接経費:3400000円 、 間接経費:1020000円 )

    転写因子導入によるヒトES細胞の分化誘導を制御するオープンクロマチンを同定するためにATACシーケンス法を行った。MYOD1導入による骨格筋分化およびNGN2導入による神経分化の解析を行い、それぞれに特異的に存在するオープンクロマチン領域を数千箇所同定した。さらに発生過程や成体の細胞において元来MYOD1やNGN2が結合するオープンクロマチン領域以外に、ES細胞に導入した際に特異的に出現するオープンクロマチン領域が存在することを明らかになった。これら2タイプのオープンクロマチン領域により制御される近傍遺伝子が協調して働くことによって、ダイレクトな細胞性質変換が可能になると考えられる。

    researchmap

  • 組織幹細胞の維持・若返りを可能にする新規分子メカニズム

    2017年 - 2020年

    科学研究費補助金・基盤研究(A) 

    洪実

      詳細を見る

    資金種別:競争的資金

    researchmap

  • ヒトES細胞の分化過程における転写因子ネットワークの解明と新規分化誘導因子の同定

    2017年 - 2018年

    科学研究費補助金・若手研究(B) 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • 分化制御に関わるヒストン脱メチル化酵素複合体の構造と機能解析

    2017年

    熊本大学発生医研究所共同研究費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • オープンクロマチン解析法を用いたヒト胚性幹細胞の分化誘導過程における転写因子ネットワークの構造解明と新規細胞分化誘導因子同定法の開発

    2016年

    慶應義塾大学医学部坂口光洋記念研究奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • ヒストン脱メチル化酵素を用いた多能性幹細胞からの分化誘導促進法の開発

    2015年 - 2016年

    日本医療研究開発機構橋渡し研究シーズA 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • トランスクリプトーム変換システムによる分化誘導の自在化

    2015年

    慶應義塾大学医学部坂口光洋記念研究奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • エピゲノム制御によるヒト多能性幹細胞の分化操作

    2015年

    慶應義塾大学医学部研究奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • ヒト多能性幹細胞から骨格筋細胞への直接分化誘導におけるゲノム高次構造の動態解析

    2014年

    慶應義塾大学医学部研究奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • 体細胞クローンにおけるゲノムリプログラミングへのヒストン変異体置換の関与

    2010年 - 2011年

    科学研究費補助金・若手研究(B) 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

  • マウス卵子における遺伝子発現プログラムの初期化機構に関する研究

    2005年 - 2007年

    科学研究費補助金・特別研究員奨励費 

    秋山智彦

      詳細を見る

    担当区分:研究代表者  資金種別:競争的資金

    researchmap

▼全件表示

社会貢献活動

  • 生殖細胞・生殖系列に関する生命倫理セミナー

    役割:講師

    慶應義塾大学生命倫理委員会  2018年3月

     詳細を見る

  • ヒトES細胞従事者に対する倫理講習会

    役割:講師

    理科学研究所バイオリソースセンター 2021年2月26日 

     詳細を見る

    種別:セミナー・ワークショップ

    researchmap